SMTL ID : 4ap9.2 (1 other biounit)

Crystal structure of phosphoserine phosphatase from T. onnurineus in complex with NDSB-201

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-octamer

Ligands

12 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)

1PS.1: 4 residues within 4Å: Chain A: R.31, I.32, T.33, G.34 No protein-ligand interaction detected (PLIP) 1PS.2: 9 residues within 4Å: Chain A: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161, D.162 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.52 Hydrogen bonds: A:W.52, A:K.141 Water bridges: A:W.52, A:G.103, A:G.142, A:Y.160 Salt bridges: A:K.141 pi-Stacking: A:W.52 1PS.3: 8 residues within 4Å: Chain B: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.52, B:K.141 Water bridges: B:D.140, B:K.164 Salt bridges: B:K.141, B:K.164 1PS.4: 4 residues within 4Å: Chain C: R.31, I.32, T.33, G.34 No protein-ligand interaction detected (PLIP) 1PS.5: 9 residues within 4Å: Chain C: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161, D.162 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:W.52 Hydrogen bonds: C:W.52, C:K.141 Water bridges: C:W.52, C:G.103, C:G.142, C:Y.160 Salt bridges: C:K.141 pi-Stacking: C:W.52 1PS.6: 8 residues within 4Å: Chain D: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:W.52, D:K.141 Water bridges: D:D.140, D:K.164 Salt bridges: D:K.141, D:K.164 1PS.7: 4 residues within 4Å: Chain E: R.31, I.32, T.33, G.34 No protein-ligand interaction detected (PLIP) 1PS.8: 9 residues within 4Å: Chain E: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161, D.162 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:W.52 Hydrogen bonds: E:W.52, E:K.141 Water bridges: E:W.52, E:G.103, E:G.142, E:Y.160 Salt bridges: E:K.141 pi-Stacking: E:W.52 1PS.9: 8 residues within 4Å: Chain F: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:W.52, F:K.141 Water bridges: F:D.140, F:K.164 Salt bridges: F:K.141, F:K.164 1PS.10: 4 residues within 4Å: Chain G: R.31, I.32, T.33, G.34 No protein-ligand interaction detected (PLIP) 1PS.11: 9 residues within 4Å: Chain G: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161, D.162 9 PLIP interactions: 9 interactions with chain G Hydrophobic interactions: G:W.52 Hydrogen bonds: G:W.52, G:K.141 Water bridges: G:W.52, G:G.103, G:G.142, G:Y.160 Salt bridges: G:K.141 pi-Stacking: G:W.52 1PS.12: 8 residues within 4Å: Chain H: G.45, L.46, W.52, F.138, D.140, K.141, Y.160, A.161 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:W.52, H:K.141 Water bridges: H:D.140, H:K.164 Salt bridges: H:K.141, H:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jung, T.-Y. et al., Identification of a Novel Ligand Binding Site in Phosphoserine Phosphatase from the Hyperthermophilic Archaeon Thermococcus Onnurineus. Proteins (2013)

Release Date

2012-12-26

Peptides

PHOSPHOSERINE PHOSPHATASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

PHOSPHOSERINE PHOSPHATASE

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