SMTL ID : 4aqb.1

MBL-Ficolin Associated Protein-1, MAP-1 aka MAP44

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 5 residues within 4Å: Chain A: E.4, N.30, E.64, F.94, S.96 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.9: 5 residues within 4Å: Chain B: E.4, N.30, E.64, F.94, S.96 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 2 residues within 4Å: Chain A: T.157, N.159 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.10: 2 residues within 4Å: Chain B: T.157, N.159 No protein-ligand interaction detected (PLIP)

12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.3: 6 residues within 4Å: Chain A: D.120, V.121, E.123, N.140, Y.141, G.144 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.120, A:D.120, A:V.121, A:G.144, H2O.1 CA.4: 4 residues within 4Å: Chain A: E.49, D.57, D.102, S.104 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.49, A:D.57, A:D.102, H2O.1, H2O.1 CA.5: 5 residues within 4Å: Chain A: E.216, Y.225, D.226, D.263, S.265 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.216, A:D.226, A:D.226, A:D.263, H2O.1 CA.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.11: 6 residues within 4Å: Chain B: D.120, V.121, E.123, N.140, Y.141, G.144 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.120, B:D.120, B:V.121, B:G.144, H2O.1 CA.12: 4 residues within 4Å: Chain B: E.49, D.57, D.102, S.104 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.49, B:D.57, B:D.102, H2O.1, H2O.1 CA.13: 5 residues within 4Å: Chain B: E.216, Y.225, D.226, D.263, S.265 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.216, B:D.226, B:D.226, B:D.263, H2O.1 CA.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.15: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skjoedt, M.O. et al., Crystal Structure and Functional Characterization of the Complement Regulator Mannose-Binding Lectin (Mbl)/Ficolin-Associated Protein-1 (Map-1). J.Biol.Chem. (2012)

Release Date

2012-08-08

Peptides

MANNAN-BINDING LECTIN SERINE PROTEASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MANNAN-BINDING LECTIN SERINE PROTEASE 1