SMTL ID : 4aql.1

HUMAN GUANINE DEAMINASE IN COMPLEX WITH VALACYCLOVIR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.104, H.106, H.262, H.301, D.352 Ligands: TXC.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.104, A:H.106, A:H.262, A:D.352 ZN.3: 6 residues within 4Å: Chain B: H.104, H.106, H.262, H.301, D.352 Ligands: TXC.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.104, B:H.106, B:H.262, B:D.352

2 x TXC: 2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]ethyl L-valinate(Non-covalent)

TXC.2: 18 residues within 4Å: Chain A: H.106, Q.109, L.121, L.122, W.124, L.125, R.235, F.236, L.238, H.262, E.265, D.268, E.269, A.272, H.301, S.326, D.352 Ligands: ZN.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.238, A:D.268, A:A.272 Hydrogen bonds: A:Q.109, A:L.122, A:R.235, A:E.265, A:H.301, A:S.326 Water bridges: A:Q.109, A:D.352 Salt bridges: A:E.265, A:D.352 pi-Stacking: A:F.236, A:H.262 pi-Cation interactions: A:H.262 TXC.4: 18 residues within 4Å: Chain B: H.106, Q.109, L.121, L.122, W.124, L.125, R.235, F.236, L.238, H.262, E.265, D.268, E.269, A.272, H.301, S.326, D.352 Ligands: ZN.3 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.238, B:D.268, B:A.272 Hydrogen bonds: B:Q.109, B:L.122, B:R.235, B:H.301, B:S.326 Water bridges: B:Q.109, B:D.352 Salt bridges: B:E.265, B:D.352 pi-Stacking: B:F.236, B:H.262 pi-Cation interactions: B:H.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egeblad, L. et al., Pan-Pathway Based Interaction Profiling of Fda-Approved Nucleoside and Nucleobase Analogs with Enzymes of the Human Nucleotide Metabolism. Plos One (2012)

Release Date

2012-05-02

Peptides

GUANINE DEAMINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GUANINE DEAMINASE

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