SMTL ID : 4aqq.3 (4 other biounits)

Dodecahedron formed of penton base protein from adenovirus Ad3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.75 Å

Oligo State

homo-pentamer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 9 residues within 4Å: Chain A: E.418 Chain B: E.418 Chain C: E.418 Chain D: E.418 Chain E: E.418 Ligands: CA.2, CA.3, CA.4, CA.5 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A Metal complexes: E:E.418, D:E.418, A:E.418 CA.2: 9 residues within 4Å: Chain A: E.418 Chain B: E.418 Chain C: E.418 Chain D: E.418 Chain E: E.418 Ligands: CA.1, CA.3, CA.4, CA.5 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain B Metal complexes: E:E.418, A:E.418, B:E.418 CA.3: 9 residues within 4Å: Chain A: E.418 Chain B: E.418 Chain C: E.418 Chain D: E.418 Chain E: E.418 Ligands: CA.1, CA.2, CA.4, CA.5 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Metal complexes: A:E.418, C:E.418, B:E.418 CA.4: 9 residues within 4Å: Chain A: E.418 Chain B: E.418 Chain C: E.418 Chain D: E.418 Chain E: E.418 Ligands: CA.1, CA.2, CA.3, CA.5 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B Metal complexes: D:E.418, C:E.418, B:E.418 CA.5: 9 residues within 4Å: Chain A: E.418 Chain B: E.418 Chain C: E.418 Chain D: E.418 Chain E: E.418 Ligands: CA.1, CA.2, CA.3, CA.4 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain C Metal complexes: E:E.418, D:E.418, C:E.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szolajska, E. et al., The Structural Basis for the Integrity of Adenovirus Ad3 Dodecahedron. Plos One (2012)

Release Date

2012-10-24

Peptides

L2 PROTEIN III (PENTON BASE): ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

L2 PROTEIN III (PENTON BASE)

Related Entries With Identical Sequence