SMTL ID : 4aqv.1

Model of human kinesin-5 motor domain (3HQD) and mammalian tubulin heterodimer (1JFF) docked into the 9.7-angstrom cryo-EM map of microtubule-bound kinesin-5 motor domain in the AMPPPNP state.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 9.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: Q.11 Ligands: GTP.2 Protein-ligand interaction information (PLIP) not available MG.6: 2 residues within 4Å: Chain C: S.233 Ligands: ANP.5 Protein-ligand interaction information (PLIP) not available

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 10 residues within 4Å: Chain A: G.10, Q.11, A.12, A.99, N.101, G.143, G.144, T.145, G.146 Ligands: MG.1 Protein-ligand interaction information (PLIP) not available

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 6 residues within 4Å: Chain B: G.10, Q.11, C.12, G.141, T.143, G.144 Protein-ligand interaction information (PLIP) not available

1 x TA1: TAXOL(Non-covalent)

TA1.4: 8 residues within 4Å: Chain B: V.23, L.228, L.273, T.274, R.276, P.358, R.359, G.360 Protein-ligand interaction information (PLIP) not available

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.5: 10 residues within 4Å: Chain C: T.107, G.108, G.110, K.111, T.112, S.232, S.233, A.267, G.268 Ligands: MG.6 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goulet, A. et al., The Structural Basis of Force Generation by the Mitotic Motor Kinesin-5. J.Biol.Chem. (2012)

Release Date

2012-11-21

Peptides

TUBULIN ALPHA-1D CHAIN: A
TUBULIN BETA-2B CHAIN: B
KINESIN-LIKE PROTEIN KIF11: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

TUBULIN ALPHA-1D CHAIN

TUBULIN BETA-2B CHAIN

KINESIN-LIKE PROTEIN KIF11

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