SMTL ID : 4arv.1 (1 other biounit)

Yersinia kristensenii phytase apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.44, H.45, R.48, R.119, H.333, D.334 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.334, A:D.334 Water bridges: A:R.48, A:R.48, A:R.119 Salt bridges: A:R.44, A:H.45, A:R.48, A:R.119, A:H.333 PO4.2: 4 residues within 4Å: Chain A: D.117, R.119, H.153, H.333 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.115 Water bridges: A:R.119, A:R.119, A:R.119, A:R.119, A:H.153, A:H.333 Salt bridges: A:R.119, A:H.153, A:H.333

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: R.48, P.50, T.51, T.245, E.248, I.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.48, A:R.48, A:T.51, A:T.51 EDO.4: 1 residues within 4Å: Chain A: Q.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.210 EDO.5: 4 residues within 4Å: Chain A: K.161, Y.291, H.295, S.438 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.438, A:S.438

1 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)

TOE.6: 5 residues within 4Å: Chain A: Y.34, Y.97, W.368, N.419, L.421 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.419 Water bridges: A:Y.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ariza, A. et al., Degradation of Phytate by the 6-Phytase from Hafnia Alvei: A Combined Structural and Solution Study. Plos One (2013)

Release Date

2013-05-08

Peptides

PHYTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHYTASE

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