SMTL ID : 4as7.1

Eg5 complex 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.24, R.26, P.27, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, E.118 Ligands: CD.10 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.24, A:G.108, A:T.109, A:G.110, A:K.111, A:T.112, A:F.113, A:E.118 Water bridges: A:R.24, A:R.24, A:R.24, A:N.29, A:N.29, A:T.107, A:K.111, A:T.114 Salt bridges: A:K.111 pi-Stacking: A:F.113, A:F.113

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: H.38 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: D.91 Ligands: CD.7 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: R.297, H.308, P.310, E.313 Ligands: CD.11, CL.13 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: E.313 Ligands: CL.4, CD.11 Ligand excluded by PLIP

1 x CO: COBALT (II) ION(Non-covalent)

CO.5: 2 residues within 4Å: Chain A: G.73, A.74 No protein-ligand interaction detected (PLIP)

6 x CD: CADMIUM ION(Non-covalent)

CD.6: 2 residues within 4Å: Chain A: E.128, D.208 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.128, A:D.208, A:D.208, H2O.5 CD.7: 3 residues within 4Å: Chain A: C.87, D.91 Ligands: CL.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.87, A:D.91, A:D.91 CD.8: 1 residues within 4Å: Chain A: D.149 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.149, A:D.149, H2O.5 CD.9: 2 residues within 4Å: Chain A: H.205, E.209 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.205, A:E.209, H2O.7, H2O.7, H2O.7 CD.10: 2 residues within 4Å: Chain A: T.112 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.112, H2O.4, H2O.4, H2O.10, H2O.10 CD.11: 3 residues within 4Å: Chain A: E.313 Ligands: CL.4, CL.13 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.313, A:E.313

1 x 6LX: N-(3-aminopropyl)-N-[(1R)-1-(3-benzyl-7-chloro-4-oxo-4H-chromen-2-yl)-2-methylpropyl]-4-methylbenzamide

6LX.12: 17 residues within 4Å: Chain A: T.112, E.116, G.117, E.118, R.119, W.127, D.130, D.133, I.136, P.137, L.160, Y.211, L.214, E.215, G.217, A.218, R.221 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:E.116, A:R.119, A:W.127, A:D.130, A:P.137, A:P.137, A:L.160, A:Y.211, A:L.214, A:L.214, A:L.214, A:E.215, A:A.218 Hydrogen bonds: A:E.116, A:R.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talapatra, S.K. et al., The Mitotic Kinesin Eg5 Overcomes Inhibition to the Phase I/II Clinical Candidate Sb743921 by an Allosteric Resistance Mechanism. J.Med.Chem. (2013)

Release Date

2013-05-15

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KINESIN-LIKE PROTEIN KIF11

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