SMTL ID : 4ask.2 (1 other biounit)

CRYSTAL STRUCTURE OF JMJD3 WITH GSK-J1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.436, C.439, C.463, C.466 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.436, A:C.439, A:C.463, A:C.466

1 x K0I: 3-[[2-pyridin-2-yl-6-(1,2,4,5-tetrahydro-3-benzazepin-3-yl)pyrimidin-4-yl]amino]propanoic acid(Non-covalent)

K0I.2: 19 residues within 4Å: Chain A: R.107, Q.109, S.131, F.189, T.191, N.192, Y.240, K.242, R.247, T.248, P.249, H.251, E.253, N.254, N.261, S.297, V.333, N.341 Ligands: CO.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.107, A:F.189, A:Y.240, A:T.248, A:P.249 Hydrogen bonds: A:Y.240, A:N.261, A:N.261 Water bridges: A:N.192, A:T.248 Salt bridges: A:K.242

1 x CO: COBALT (II) ION(Non-covalent)

CO.3: 4 residues within 4Å: Chain A: H.251, E.253, H.331 Ligands: K0I.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.251, A:E.253, H2O.11, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kruidenier, L. et al., A Selective Jumonji H3K27 Demethylase Inhibitor Modulates the Proinflammatory Macrophage Response. Nature (2012)

Release Date

2012-07-25

Peptides

LYSINE-SPECIFIC DEMETHYLASE 6B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LYSINE-SPECIFIC DEMETHYLASE 6B

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