SMTL ID : 4at7.1

Crystal structure of the NF90-NF45 dimerisation domain complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-oligomer

Ligands

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 8 residues within 4Å: Chain A: G.90, H.91, N.92, S.142, S.143, D.144, A.145, T.146 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.92, A:T.146, A:T.146 Water bridges: A:E.44, A:H.91, A:T.146 MLI.2: 6 residues within 4Å: Chain A: G.80, K.84, A.178, H.181, P.216, W.217 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.80, A:W.217 Water bridges: A:K.84 Salt bridges: A:K.84, A:K.84, A:H.181, A:H.181 MLI.6: 5 residues within 4Å: Chain B: G.98, K.102, S.211, H.214, W.251 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.98 Water bridges: B:K.102, B:A.215 Salt bridges: B:K.102, B:H.214, B:H.214

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 9 residues within 4Å: Chain A: P.256, G.257, R.271, T.274, V.275, M.276, T.277, L.278, Q.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.257, A:R.271, A:R.271, A:Q.281 1PE.4: 7 residues within 4Å: Chain A: L.62, P.66, T.68, F.69, K.115, E.118, S.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.115

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: Q.78, Y.82, K.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.83, A:K.83 PEG.7: 5 residues within 4Å: Chain B: R.213, P.296, C.297, E.298, K.299 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.213 Water bridges: B:Y.294, B:K.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolkowicz, U.M. et al., NF45 Dimerizes with NF90, Zfr and Spnr Via a Conserved Domain that Has a Nucleotidyltransferase Fold. Nucleic Acids Res. (2012)

Release Date

2012-08-01

Peptides

INTERLEUKIN ENHANCER-BINDING FACTOR 2: A
INTERLEUKIN ENHANCER-BINDING FACTOR 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

INTERLEUKIN ENHANCER-BINDING FACTOR 2

INTERLEUKIN ENHANCER-BINDING FACTOR 3

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