SMTL ID : 4atm.1

Crystal structure of the BAR domain of human Amphiphysin, isoform 1 at 1.8 Angstrom resolution featuring increased order at the N- terminus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Y.43, N.46, P.193, W.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.46 Water bridges: A:Y.43, A:F.47 EDO.2: 6 residues within 4Å: Chain A: G.30, D.33, L.143, Y.146, D.147, R.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.33, A:Y.146, A:D.147, A:R.150 EDO.4: 5 residues within 4Å: Chain A: L.29, D.33, Y.146, Q.178, E.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.33, A:Y.146, A:E.182 EDO.5: 3 residues within 4Å: Chain A: I.136, A.137, S.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.140, A:S.140 Water bridges: A:S.140 EDO.6: 3 residues within 4Å: Chain A: S.165, R.166, K.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.165 EDO.8: 4 residues within 4Å: Chain B: Y.43, N.46, P.193, W.196 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.46 Water bridges: B:Y.43, B:F.47 EDO.9: 6 residues within 4Å: Chain B: G.30, D.33, L.143, Y.146, D.147, R.150 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.146, B:D.147, B:D.147, B:R.150 EDO.11: 5 residues within 4Å: Chain B: L.29, D.33, Y.146, Q.178, E.182 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.33 Water bridges: B:D.33 EDO.12: 3 residues within 4Å: Chain B: I.136, A.137, S.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.140, B:S.140 Water bridges: B:S.140 EDO.13: 3 residues within 4Å: Chain B: S.165, R.166, K.169 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.165

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: E.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.73 Water bridges: A:E.73 GOL.7: 8 residues within 4Å: Chain A: S.211, E.214 Chain B: S.75, T.79, V.99, C.103, C.225, L.228 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.75, B:T.79 Water bridges: B:S.75, A:Y.64 GOL.10: 1 residues within 4Å: Chain B: E.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.73 Water bridges: B:E.73, B:E.73 GOL.14: 8 residues within 4Å: Chain A: S.75, T.79, V.99, C.103, C.225, L.228 Chain B: S.211, E.214 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.75 Water bridges: A:S.75, B:Y.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allerston, C.K. et al., Crystal Structure of the Bar Domain of Human Amphiphysin, Isoform 1. To be Published

Release Date

2012-05-30

Peptides

AMPHIPHYSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

AMPHIPHYSIN