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SMTL ID : 4atp.2
(2 other biounits)
Structure of GABA-transaminase A1R958 from Arthrobacter aurescens in complex with PLP
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
homo-tetramer
Ligands
4 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
12 residues within 4Å:
Chain A:
S.133
,
G.134
,
A.135
,
Y.161
,
H.162
,
E.233
,
D.266
,
V.268
,
Q.269
,
K.295
Chain B:
G.323
,
T.324
17
PLIP interactions
:
13 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:Y.161
,
A:E.233
,
A:V.268
,
A:K.295
Hydrogen bonds:
A:S.133
,
A:G.134
,
A:A.135
,
A:Q.269
,
B:T.324
,
B:T.324
,
B:T.324
Water bridges:
A:S.133
,
A:E.233
,
A:E.238
,
B:Y.325
Salt bridges:
A:K.295
pi-Stacking:
A:Y.161
PLP.2:
12 residues within 4Å:
Chain A:
G.323
,
T.324
Chain B:
S.133
,
G.134
,
A.135
,
Y.161
,
H.162
,
E.233
,
D.266
,
V.268
,
Q.269
,
K.295
15
PLIP interactions
:
11 interactions with chain B
,
4 interactions with chain A
Hydrophobic interactions:
B:E.233
,
B:V.268
,
B:K.295
Hydrogen bonds:
B:G.134
,
B:A.135
,
B:Q.269
,
B:K.295
,
A:T.324
,
A:T.324
,
A:T.324
Water bridges:
B:Y.161
,
B:E.233
,
A:G.326
Salt bridges:
B:K.295
pi-Stacking:
B:Y.161
PLP.3:
13 residues within 4Å:
Chain C:
S.133
,
G.134
,
A.135
,
Y.161
,
H.162
,
E.233
,
D.266
,
V.268
,
Q.269
,
K.295
Chain D:
G.323
,
T.324
,
Y.325
12
PLIP interactions
:
10 interactions with chain C
,
2 interactions with chain D
Hydrophobic interactions:
C:E.233
,
C:V.268
,
C:K.295
Hydrogen bonds:
C:G.134
,
C:A.135
,
C:Q.269
,
D:T.324
,
D:Y.325
Water bridges:
C:Y.161
,
C:E.233
Salt bridges:
C:K.295
pi-Stacking:
C:Y.161
PLP.4:
11 residues within 4Å:
Chain C:
T.324
Chain D:
S.133
,
G.134
,
A.135
,
Y.161
,
H.162
,
E.233
,
D.266
,
V.268
,
Q.269
,
K.295
12
PLIP interactions
:
10 interactions with chain D
,
2 interactions with chain C
Hydrophobic interactions:
D:E.233
,
D:V.268
,
D:K.295
Hydrogen bonds:
D:G.134
,
D:A.135
,
D:Q.269
,
C:T.324
,
C:T.324
Water bridges:
D:E.233
,
D:E.238
Salt bridges:
D:K.295
pi-Stacking:
D:Y.161
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bruce, H. et al., Structures of a Gamma-Aminobutyrate (Gaba) Transaminase from the S-Triazine-Degrading Organism Arthrobacter Aurescens Tc1 in Complex with Plp and with its External Aldimine Plp- Gaba Adduct. Acta Crystallogr.,Sect.F (2012)
Release Date
2012-10-10
Peptides
4-AMINOBUTYRATE TRANSAMINASE:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
E
B
F
C
G
D
H
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4-AMINOBUTYRATE TRANSAMINASE
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4atp.1
|
4atp.3
|
4atq.1
|
4atq.2
|
4atq.3
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