SMTL ID : 4auo.1 (1 other biounit)

Crystal structure of MMP-1(E200A) in complex with a triple-helical collagen peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-3-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.25, R.66, E.100, E.102 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.100, A:E.100 CA.2: 4 residues within 4Å: Chain A: D.186, E.230, D.279, D.328 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.186, A:E.230, A:D.279, A:D.328 CA.3: 8 residues within 4Å: Chain A: A.58, D.59, I.60, M.61, G.91, I.92, G.93, D.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.59, A:G.91, A:G.93, A:D.95 CA.4: 7 residues within 4Å: Chain A: D.76, G.77, P.78, G.79, N.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:N.81, A:D.99, A:E.102

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.6: 3 residues within 4Å: Chain A: H.119, H.123, H.129 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manka, S.W. et al., Structural Insights Into Triple-Helical Collagen Cleavage by Matrix Metalloproteinase 1. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-07-11

Peptides

INTERSTITIAL COLLAGENASE: A
TRIPLE-HELICAL COLLAGEN PEPTIDE: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

INTERSTITIAL COLLAGENASE

TRIPLE-HELICAL COLLAGEN PEPTIDE

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