SMTL ID : 4ava.1

Crystal structure of protein lysine acetyltransferase Rv0998 from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.1: 24 residues within 4Å: Chain A: H.173, I.236, A.237, F.238, T.239, V.240, Q.245, G.246, R.247, G.248, I.249, G.250, S.251, R.272, M.273, N.277, P.279, M.280, T.282, I.283, R.286 Ligands: ACT.2, EDO.4, PEG.8 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.238, A:M.280 Hydrogen bonds: A:F.238, A:F.238, A:V.240, A:Q.245, A:G.246, A:G.248, A:I.249, A:G.250, A:S.251, A:N.277, A:T.282 Water bridges: A:Y.244, A:G.246, A:R.247, A:S.251, A:S.251, A:S.251, A:R.286 Salt bridges: A:R.286

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: H.173 Ligands: ACO.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.274 Salt bridges: A:H.173

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: E.167, V.219, A.220, D.221, A.241 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: R.286, Y.287, S.312 Ligands: ACO.1 5 PLIP interactions: 5 interactions with chain A Water bridges: A:S.251, A:R.286, A:Y.287, A:S.312, A:S.312 EDO.5: 3 residues within 4Å: Chain A: S.275, D.276, V.278 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: H.171, G.172, H.173, A.237, T.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.172, A:H.173, A:T.239 Water bridges: A:R.223, A:F.238

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 3 residues within 4Å: Chain A: R.281, D.285, W.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.281 Water bridges: A:A.289, A:W.291 PEG.8: 2 residues within 4Å: Chain A: G.246 Ligands: ACO.1 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 1 residues within 4Å: Chain A: D.214 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.214, H2O.121, H2O.158, H2O.159, H2O.160, H2O.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.J. et al., Cyclic AMP Regulation of Protein Lysine Acetylation in Mycobacterium Tuberculosis. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-07-11

Peptides

LYSINE ACETYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSINE ACETYLTRANSFERASE

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