SMTL ID : 4aw2.1

Crystal structure of CDC42 binding protein kinase alpha (MRCK alpha)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 22E: 5,11-dimethyl-1-oxo-2,6-dihydro-1h-pyrido[4,3-b]carbazol-9-yl benzoate(Non-covalent)

22E.1: 11 residues within 4Å: Chain A: D.32, I.35, K.67, Q.68, R.70, H.72, Q.144, D.145, D.146, H.395, T.402 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.35, A:I.35, A:Q.68, A:Q.68, A:Q.144 Hydrogen bonds: A:D.32, A:D.32, A:R.70 Water bridges: A:Q.68 Salt bridges: A:K.67, A:H.72 pi-Cation interactions: A:K.67, A:K.67 22E.6: 11 residues within 4Å: Chain B: D.32, I.35, K.67, Q.68, R.70, H.72, Q.144, D.145, D.146, H.395, T.402 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.35, B:I.35, B:Q.68, B:Q.68, B:Q.144 Hydrogen bonds: B:D.32, B:R.70, B:T.402 Water bridges: B:Q.68 Salt bridges: B:K.67, B:H.72 pi-Cation interactions: B:K.67, B:K.67

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Y.55, W.58 Chain B: R.122, L.396, P.397 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.122, B:R.122 EDO.3: 9 residues within 4Å: Chain A: F.87, K.105, L.107, M.112, A.119, C.120, F.121, E.124, G.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.105, A:K.105, A:T.118, A:C.120 EDO.4: 8 residues within 4Å: Chain A: I.82, V.90, A.103, D.154, Y.155, Y.156, L.207, F.370 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.154, A:Y.156 EDO.5: 5 residues within 4Å: Chain A: L.9 Chain B: E.28, R.70, C.407, L.409 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.70, B:R.70 EDO.7: 5 residues within 4Å: Chain A: R.122, L.396, P.397 Chain B: Y.55, W.58 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:E.54 Hydrogen bonds: A:R.122, A:R.122 EDO.8: 9 residues within 4Å: Chain B: F.87, K.105, L.107, M.112, A.119, C.120, F.121, E.124, G.220 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.105, B:K.105, B:T.118, B:C.120 EDO.9: 8 residues within 4Å: Chain B: I.82, V.90, A.103, D.154, Y.155, Y.156, L.207, F.370 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.154, B:Y.156 EDO.10: 5 residues within 4Å: Chain A: E.28, R.70, C.407, L.409 Chain B: L.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.28, A:R.70, A:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elkins, J.M. et al., Cdc42 Binding Protein Kinase Alpha (Mrck Alpha). To be Published

Release Date

2012-06-20

Peptides

SERINE/THREONINE-PROTEIN KINASE MRCK ALPHA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SERINE/THREONINE-PROTEIN KINASE MRCK ALPHA