SMTL ID : 4aw4.2 (2 other biounits)

Engineered variant of Listeria monocytogenes InlB internalin domain with an additional leucine rich repeat inserted

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: N.52, N.72, S.74, F.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.72, A:N.75 GOL.4: 4 residues within 4Å: Chain A: T.170, V.171, S.173, R.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.173, A:R.174 Water bridges: A:S.173 GOL.5: 3 residues within 4Å: Chain A: Q.187, H.209, E.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.187 Water bridges: A:D.185, A:N.208, A:E.231 GOL.6: 2 residues within 4Å: Chain A: S.229, H.302 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.207, A:S.229

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: V.151, H.152, P.154, R.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.151 Salt bridges: A:H.152, A:R.174 SO4.3: 2 residues within 4Å: Chain A: E.119, H.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.141 Water bridges: A:G.143 Salt bridges: A:H.141 SO4.7: 2 residues within 4Å: Chain A: P.291, R.300 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.289, A:V.292 Salt bridges: A:R.300 SO4.8: 3 residues within 4Å: Chain A: S.255, L.256, K.270 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.256 Water bridges: A:G.254 Salt bridges: A:K.270 SO4.9: 1 residues within 4Å: Chain A: K.99 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.99 SO4.10: 4 residues within 4Å: Chain A: S.189, H.209, C.232, L.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.189, A:S.189, A:L.233 Water bridges: A:S.189 Salt bridges: A:H.209 SO4.11: 2 residues within 4Å: Chain A: S.263, D.264 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.264, A:D.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niemann, H.H. et al., Engineered Variants of Inlb with an Additional Leucine-Rich Repeat Discriminate between Physiologically Relevant and Packing Contacts in Crystal Structures of the Inlb:Met Complex. Protein Sci. (2012)

Release Date

2012-08-15

Peptides

INTERNALIN B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

INTERNALIN B

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