SMTL ID : 4awt.1

Crystal structure of the reduced Shewanella Yellow Enzyme 1 (SYE1) M25L mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.98 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 20 residues within 4Å: Chain A: P.23, P.24, L.25, T.26, G.58, Q.100, H.181, N.184, R.233, V.272, W.274, G.300, R.301, F.321, G.322, R.323, P.324, L.349, F.350 Ligands: BOG.3 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.25, A:W.274, A:R.323, A:L.349, A:F.350 Hydrogen bonds: A:P.24, A:T.26, A:T.26, A:G.58, A:Q.100, A:Q.100, A:N.184, A:R.233, A:R.233, A:R.301, A:G.322, A:R.323 Water bridges: A:G.300, A:G.300, A:R.323, A:R.323 Salt bridges: A:R.323

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.301, R.323, H.344 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.301, A:R.323 Salt bridges: A:R.301, A:R.323, A:H.344

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.3: 11 residues within 4Å: Chain A: T.26, Y.68, W.102, F.132, Y.186, N.241, D.273, W.274, P.346, F.350 Ligands: FMN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.274, A:W.274, A:F.350 Hydrogen bonds: A:T.26, A:Y.186, A:N.241 Water bridges: A:N.184

1 x 01F: ethyl hydrogen carbonate(Non-covalent)

01F.4: 5 residues within 4Å: Chain A: S.194, G.205, S.206, L.207, R.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.205, A:L.207, A:R.210 Water bridges: A:R.210

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.5: 5 residues within 4Å: Chain A: A.46, Q.47, A.89, A.92, K.93 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.93 Water bridges: A:K.17, A:K.17, A:K.17, A:K.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Modulation of Isoalloxazine Ring Planarity Influences Fmn Electronic Properties in Old Yellow Enzymes. To be Published

Release Date

2013-06-26

Peptides

SYE1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SYE1

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