SMTL ID : 4awu.1

Crystal structure of the oxidized Shewanella Yellow Enzyme 1 (SYE1) M25L mutant in complex with para-chlorophenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 21 residues within 4Å: Chain A: P.23, P.24, L.25, T.26, G.58, Q.100, H.181, N.184, R.233, V.272, W.274, A.299, G.300, R.301, F.321, G.322, R.323, P.324, L.349, F.350 Ligands: 4CH.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.25, A:W.274, A:R.323, A:L.349, A:F.350 Hydrogen bonds: A:P.24, A:T.26, A:T.26, A:G.58, A:Q.100, A:Q.100, A:N.184, A:R.233, A:R.233, A:R.301, A:G.322, A:R.323 Water bridges: A:G.300, A:R.301, A:R.301, A:Y.302, A:Y.302, A:Y.302 Salt bridges: A:R.323

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.301, R.323, H.344 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.301 Salt bridges: A:R.301, A:R.323, A:H.344

3 x 4CH: 4-chlorophenol(Non-covalent)

4CH.3: 8 residues within 4Å: Chain A: T.26, W.102, H.181, N.184, Y.186, L.240, F.350 Ligands: FMN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.102, A:Y.186, A:L.240 Hydrogen bonds: A:H.181, A:N.184 4CH.4: 7 residues within 4Å: Chain A: S.28, Y.68, A.69, W.70, F.132, F.142, F.350 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.70, A:W.70, A:F.132, A:F.132, A:F.142, A:F.350 Hydrogen bonds: A:S.28, A:A.69 pi-Stacking: A:F.132 4CH.5: 2 residues within 4Å: Chain A: R.84, E.88 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.84, A:E.88 Water bridges: A:R.84, A:R.84

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.6: 5 residues within 4Å: Chain A: I.43, A.46, Q.47, A.92, K.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Modulation of Isoalloxazine Ring Planarity Influences Fmn Electronic Properties in Old Yellow Enzymes. To be Published

Release Date

2013-06-26

Peptides

OXIDOREDUCTASE, FMN-BINDING: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OXIDOREDUCTASE, FMN-BINDING