SMTL ID : 4axe.1

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: E.23, G.24, G.25, A.26, N.27, V.29, V.43, R.45, L.151, N.152, D.153, H.154, S.155, E.171, F.248, M.377, I.411, D.412 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.24, A:G.25, A:A.26, A:N.27, A:N.27, A:N.152, A:H.154, A:E.171, A:D.412, A:D.412 Salt bridges: A:R.45, A:R.45

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.325, C.335, C.338, H.351 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.325, A:C.335, A:C.338, A:H.351

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: K.173, K.175, K.205, N.243, E.260 Ligands: SO4.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.243, A:N.243 Salt bridges: A:K.173, A:K.175, A:K.205 SO4.4: 5 residues within 4Å: Chain A: E.23, R.135, N.243, R.246, G.259 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.259 Water bridges: A:E.23, A:E.23, A:R.246 Salt bridges: A:R.135, A:R.246 SO4.5: 4 residues within 4Å: Chain A: K.235, Y.238, S.239, L.293 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.235 SO4.6: 4 residues within 4Å: Chain A: G.103, P.104, K.105, R.308 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.105 Salt bridges: A:R.308 SO4.7: 4 residues within 4Å: Chain A: N.58, S.59, T.67, S.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.59, A:S.68 SO4.8: 6 residues within 4Å: Chain A: K.175, R.197, H.201, D.373, L.427 Ligands: SO4.3 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.201, A:H.201 Salt bridges: A:K.175, A:R.197, A:H.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banos-Sanz, J.I. et al., Conformational Changes Undergone by Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Upon Substrate Binding: The Role of N-Lobe and Enantiomeric Substrate Preference. J.Biol.Chem. (2012)

Release Date

2012-07-04

Peptides

INOSITOL-PENTAKISPHOSPHATE 2-KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

INOSITOL-PENTAKISPHOSPHATE 2-KINASE