SMTL ID : 4ay2.1

Capturing 5' tri-phosphorylated RNA duplex by RIG-I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.572, C.575, C.626, C.631 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.572, A:C.575, A:C.626, A:C.631

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: F.3, K.4, R.6, Q.9, P.27, T.28, G.29, C.30, G.31, K.32, T.33 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.6, A:Q.9, A:Q.9, A:G.29, A:C.30, A:G.31, A:G.31, A:K.32, A:T.33, A:T.33 Salt bridges: A:K.32 pi-Cation interactions: A:R.6

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: K.32, T.33, D.134 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, D. et al., Visualizing the Determinants of Viral RNA Recognition by Innate Immune Sensor Rig-I. Structure (2012)

Release Date

2012-10-03

Peptides

PROBABLE ATP-DEPENDENT RNA HELICASE DDX58: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROBABLE ATP-DEPENDENT RNA HELICASE DDX58