SMTL ID : 4ayn.1

Structure of the C-terminal barrel of Neisseria meningitidis FHbp Variant 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.155, H.171, R.184 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.155 Salt bridges: A:H.171, A:R.184 SO4.2: 4 residues within 4Å: Chain A: E.142, H.143, H.209 Chain B: K.245 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:H.143 Salt bridges: A:H.143, A:H.209, B:K.245 Water bridges: B:K.245, B:K.245 SO4.3: 5 residues within 4Å: Chain A: S.162, S.163, D.164, Q.193, H.251 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.162, A:S.163, A:D.164, A:D.164, A:Q.193 Water bridges: A:S.162, A:D.164, A:E.252 Salt bridges: A:H.251 SO4.4: 4 residues within 4Å: Chain A: S.151, G.152, T.177, H.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.151, A:G.152 Salt bridges: A:H.264 SO4.5: 2 residues within 4Å: Chain A: K.153, H.263 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.153, A:H.263 SO4.6: 3 residues within 4Å: Chain A: H.157, R.169, H.171 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.157, A:R.169, A:H.171 SO4.7: 3 residues within 4Å: Chain B: H.157, R.169, H.171 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.157, B:R.169, B:H.171 SO4.8: 8 residues within 4Å: Chain A: L.213, T.225, H.227 Chain B: H.143, D.205, V.211, H.227, A.229 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.225, B:D.205 Water bridges: A:T.225, A:H.227, A:S.241, B:A.229 Salt bridges: A:H.227, B:H.143, B:H.227 SO4.9: 3 residues within 4Å: Chain B: E.142, H.143, H.209 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.142, B:H.143 Salt bridges: B:H.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, S. et al., Design and Evaluation of Meningococcal Vaccines Through Structure-Based Modification of Host and Pathogen Molecules. Plos Pathog. (2012)

Release Date

2012-11-07

Peptides

FACTOR H-BINDING PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FACTOR H-BINDING PROTEIN