SMTL ID : 4azd.1

T57V mutant of aspartate decarboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-tetramer

Ligands

8 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 12 residues within 4Å: Chain A: G.41, V.74, Y.75, N.89, G.90, A.91, A.92 Chain D: K.26, H.28, W.64, R.71, I.103 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain A Hydrophobic interactions: D:W.64, A:V.74 Salt bridges: D:K.26, D:H.28, D:R.71 Hydrogen bonds: A:Y.75, A:A.91, A:A.92 Water bridges: A:C.43 MLI.2: 6 residues within 4Å: Chain A: R.29, V.66, T.67, I.101 Chain B: L.37, H.38 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.66, B:L.37 Salt bridges: A:R.29, B:H.38 MLI.3: 6 residues within 4Å: Chain A: S.42, N.58, Y.75, I.77 Chain D: P.120, V.122 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:S.42, A:S.42, A:N.58, A:Y.75 Hydrophobic interactions: D:V.122 Water bridges: D:Y.124 MLI.4: 12 residues within 4Å: Chain A: K.26, H.28, W.64, R.71, I.103 Chain B: G.41, V.74, Y.75, N.89, G.90, A.91, A.92 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:V.74, A:W.64 Hydrogen bonds: B:A.91, B:A.92 Salt bridges: A:K.26, A:H.28, A:R.71 MLI.5: 12 residues within 4Å: Chain B: K.26, H.28, W.64, R.71, I.103 Chain C: G.41, V.74, Y.75, N.89, G.90, A.91, A.92 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:V.74, B:W.64 Hydrogen bonds: C:A.91, C:A.92 Water bridges: C:C.43 Salt bridges: B:K.26, B:H.28, B:R.71 MLI.6: 6 residues within 4Å: Chain C: R.29, V.66, T.67, I.101 Chain D: L.37, H.38 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:L.37, C:V.66 Salt bridges: D:H.38, C:R.29 MLI.7: 6 residues within 4Å: Chain B: P.120, V.122 Chain C: S.42, N.58, Y.75, I.77 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.42, C:S.42, C:N.58, C:Y.75, C:Y.75 Hydrophobic interactions: B:V.122 MLI.8: 12 residues within 4Å: Chain C: K.26, H.28, W.64, R.71, I.103 Chain D: G.41, V.74, Y.75, N.89, G.90, A.91, A.92 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:W.64, D:V.74 Salt bridges: C:K.26, C:H.28, C:R.71 Hydrogen bonds: D:Y.75, D:A.91, D:A.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Webb, M.E. et al., Threonine 57 is Required for the Post-Translational Activation of Escherichia Coli Aspartate Alpha-Decarboxylase. Acta Crystallogr.,Sect.D (2014)

Release Date

2012-07-25

Peptides

ASPARTATE 1-DECARBOXYLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

ASPARTATE 1-DECARBOXYLASE

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