SMTL ID : 4b20.2 (3 other biounits)

Structural basis of DNA loop recognition by Endonuclease V

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x DC- DG- DA- DC- DA- DG: 5'-D(*GP*CP*GP*AP*CP*AP*GP)-3'(Non-covalent)

DC-DG-DA-DC-DA-DG.1: 19 residues within 4Å: Chain A: D.43, Y.80, P.82, G.83, L.84, L.85, D.110, G.111, Q.112, H.116, G.121, I.122, A.138, K.139, S.140, R.141, L.142 Chain B: A.1 Ligands: MG.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.46, A:Q.218 Salt bridges: A:K.139, A:H.214, A:K.221

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.43, L.44, D.110 Chain B: A.1 Ligands: DC-DG-DA-DC-DA-DG.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.43, A:D.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosnes, I. et al., Structural Basis of DNA Loop Recognition by Endonuclease V. Structure (2013)

Release Date

2013-04-17

Peptides

ENDONUCLEASE V: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ENDONUCLEASE V

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