SMTL ID : 4b3o.1

Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EFZ: (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE(Non-covalent)

EFZ.1: 13 residues within 4Å: Chain A: L.100, K.101, K.103, V.106, V.179, Y.181, Y.188, V.189, G.190, F.227, L.234, H.235, Y.318 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.100, A:V.106, A:V.106, A:Y.181, A:Y.188, A:Y.188, A:Y.318 Hydrogen bonds: A:K.101, A:K.101 Halogen bonds: A:V.179

2 x CA: CALCIUM ION(Non-functional Binders)

CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lapkouski, M. et al., Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-01-16

Peptides

REVERSE TRANSCRIPTASE/RIBONUCLEASE H: A
P51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

REVERSE TRANSCRIPTASE/RIBONUCLEASE H

P51 RT

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