SMTL ID : 4b4l.1

CRYSTAL STRUCTURE OF AN ARD DAP-KINASE 1 MUTANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 8 residues within 4Å: Chain A: L.21, G.22, S.23, K.44, I.79, L.95, I.162, D.163 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.23, A:S.23, A:D.163 Water bridges: A:D.163, A:D.163, A:F.164 1PE.2: 5 residues within 4Å: Chain A: T.17, G.18, V.28, K.30, F.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.30 Water bridges: A:E.20 1PE.3: 5 residues within 4Å: Chain A: E.19, L.21, K.31, Q.40, A.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.31

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.256 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.256 SO4.5: 2 residues within 4Å: Chain A: F.238, R.255 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.251, A:R.255 SO4.6: 4 residues within 4Å: Chain A: R.49, K.52, S.59, R.60 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.60 Water bridges: A:R.49, A:R.49, A:R.49, A:E.61 Salt bridges: A:R.49, A:K.52 SO4.7: 3 residues within 4Å: Chain A: K.110, E.111, S.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.111, A:S.112 Salt bridges: A:K.110 SO4.8: 4 residues within 4Å: Chain A: Q.8, E.9, N.10, Y.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.9, A:N.10, A:Y.14 SO4.9: 3 residues within 4Å: Chain A: A.99, R.152, N.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.153 Water bridges: A:A.99 Salt bridges: A:R.152 SO4.10: 2 residues within 4Å: Chain A: R.7, K.71 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.7, A:K.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Temmerman, K. et al., A Pef/Y Substrate Recognition and Signature Motif Plays a Critical Role in Dapk-Related Kinase Activity. Chem.Biol. (2014)

Release Date

2013-08-21

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DEATH-ASSOCIATED PROTEIN KINASE 1