- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 20 residues within 4Å:- Chain A: K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407
- Ligands: FAD.1, ORN.3
33 PLIP interactions:33 interactions with chain A- Hydrophobic interactions: A:Q.256
- Hydrogen bonds: A:K.100, A:Q.102, A:R.144, A:S.254, A:S.254, A:G.255, A:Q.256, A:S.257, A:S.257, A:R.279, A:R.279, A:N.323, A:N.323, A:S.325, A:S.325
- Water bridges: A:K.100, A:G.253, A:Q.256, A:A.258, A:R.279, A:D.280, A:D.280, A:Y.324, A:S.325, A:V.326, A:G.406, A:G.406, A:Y.407, A:Y.407
- Salt bridges: A:R.279
- pi-Cation interactions: A:R.279, A:R.279
NAP.10: 20 residues within 4Å:- Chain B: K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407
- Ligands: FAD.9, ORN.11
32 PLIP interactions:32 interactions with chain B- Hydrophobic interactions: B:Q.256
- Hydrogen bonds: B:K.100, B:Q.102, B:R.144, B:S.254, B:S.254, B:G.255, B:Q.256, B:S.257, B:S.257, B:R.279, B:N.323, B:N.323, B:S.325, B:S.325
- Water bridges: B:G.253, B:S.254, B:Q.256, B:A.258, B:E.260, B:R.279, B:R.279, B:D.280, B:Y.324, B:S.325, B:V.326, B:G.406, B:G.406, B:Y.407
- Salt bridges: B:R.279
- pi-Cation interactions: B:R.279, B:R.279
NAP.18: 20 residues within 4Å:- Chain C: K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407
- Ligands: FAD.17, ORN.19
33 PLIP interactions:33 interactions with chain C- Hydrophobic interactions: C:Q.256
- Hydrogen bonds: C:K.100, C:Q.102, C:R.144, C:S.254, C:S.254, C:G.255, C:Q.256, C:S.257, C:S.257, C:R.279, C:R.279, C:N.323, C:N.323, C:S.325, C:S.325
- Water bridges: C:K.100, C:G.253, C:Q.256, C:A.258, C:R.279, C:D.280, C:D.280, C:Y.324, C:S.325, C:V.326, C:G.406, C:G.406, C:Y.407, C:Y.407
- Salt bridges: C:R.279
- pi-Cation interactions: C:R.279, C:R.279
NAP.26: 20 residues within 4Å:- Chain D: K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407
- Ligands: FAD.25, ORN.27
32 PLIP interactions:32 interactions with chain D- Hydrophobic interactions: D:Q.256
- Hydrogen bonds: D:K.100, D:Q.102, D:R.144, D:S.254, D:S.254, D:G.255, D:Q.256, D:S.257, D:S.257, D:R.279, D:N.323, D:N.323, D:S.325, D:S.325
- Water bridges: D:G.253, D:S.254, D:Q.256, D:A.258, D:E.260, D:R.279, D:R.279, D:D.280, D:Y.324, D:S.325, D:V.326, D:G.406, D:G.406, D:Y.407
- Salt bridges: D:R.279
- pi-Cation interactions: D:R.279, D:R.279
- 4 x ORN: L-ornithine(Non-covalent)
ORN.3: 9 residues within 4Å:- Chain A: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.103, A:L.467
- Hydrogen bonds: A:Q.102, A:N.293, A:S.469
- Salt bridges: A:K.107
ORN.11: 9 residues within 4Å:- Chain B: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.103, B:L.467
- Hydrogen bonds: B:Q.102, B:N.293, B:S.469
- Salt bridges: B:K.107
ORN.19: 9 residues within 4Å:- Chain C: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.18
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.103, C:L.467
- Hydrogen bonds: C:Q.102, C:N.293, C:S.469
- Salt bridges: C:K.107
ORN.27: 9 residues within 4Å:- Chain D: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.26
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.103, D:L.467
- Hydrogen bonds: D:Q.102, D:N.293, D:S.469
- Salt bridges: D:K.107
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: K.100, T.139, L.141, R.328, E.330
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.139, A:T.139, A:E.330
- Water bridges: A:F.140, A:L.141
- Salt bridges: A:R.328
SO4.12: 5 residues within 4Å:- Chain B: K.100, T.139, L.141, R.328, E.330
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.139, B:T.139, B:E.330
- Water bridges: B:F.140, B:L.141
- Salt bridges: B:R.328
SO4.20: 5 residues within 4Å:- Chain C: K.100, T.139, L.141, R.328, E.330
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.139, C:T.139, C:E.330
- Water bridges: C:F.140, C:L.141
- Salt bridges: C:R.328
SO4.28: 5 residues within 4Å:- Chain D: K.100, T.139, L.141, R.328, E.330
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:T.139, D:T.139, D:E.330
- Water bridges: D:F.140, D:L.141
- Salt bridges: D:R.328
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: Y.336, M.339, Y.340, R.343, W.352
- Chain B: F.291, E.294
- Chain D: H.133
Ligand excluded by PLIPGOL.6: 6 residues within 4Å:- Chain A: L.125, H.126, G.129, R.130, L.131, I.132
Ligand excluded by PLIPGOL.7: 8 residues within 4Å:- Chain A: L.137, T.139, P.142, A.143, E.146
- Chain D: N.337, Y.340, L.341
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain A: K.128, D.149, R.152, W.153, Q.156
Ligand excluded by PLIPGOL.13: 8 residues within 4Å:- Chain A: F.291, E.294
- Chain B: Y.336, M.339, Y.340, R.343, W.352
- Chain C: H.133
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain B: L.125, H.126, G.129, R.130, L.131, I.132
Ligand excluded by PLIPGOL.15: 8 residues within 4Å:- Chain B: L.137, T.139, P.142, A.143, E.146
- Chain C: N.337, Y.340, L.341
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain B: K.128, D.149, R.152, W.153, Q.156
Ligand excluded by PLIPGOL.21: 8 residues within 4Å:- Chain B: H.133
- Chain C: Y.336, M.339, Y.340, R.343, W.352
- Chain D: F.291, E.294
Ligand excluded by PLIPGOL.22: 6 residues within 4Å:- Chain C: L.125, H.126, G.129, R.130, L.131, I.132
Ligand excluded by PLIPGOL.23: 8 residues within 4Å:- Chain B: N.337, Y.340, L.341
- Chain C: L.137, T.139, P.142, A.143, E.146
Ligand excluded by PLIPGOL.24: 5 residues within 4Å:- Chain C: K.128, D.149, R.152, W.153, Q.156
Ligand excluded by PLIPGOL.29: 8 residues within 4Å:- Chain A: H.133
- Chain C: F.291, E.294
- Chain D: Y.336, M.339, Y.340, R.343, W.352
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain D: L.125, H.126, G.129, R.130, L.131, I.132
Ligand excluded by PLIPGOL.31: 8 residues within 4Å:- Chain A: N.337, Y.340, L.341
- Chain D: L.137, T.139, P.142, A.143, E.146
Ligand excluded by PLIPGOL.32: 5 residues within 4Å:- Chain D: K.128, D.149, R.152, W.153, Q.156
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Franceschini, S. et al., Structural Insight Into the Mechanism of Oxygen Activation and Substrate Selectivity of Flavin-Dependent N-Hydroxylating Monooxygenases. Biochemistry (2012)
- Release Date
- 2012-10-03
- Peptides
- L-ORNITHINE N5 MONOOXYGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x ORN: L-ornithine(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Franceschini, S. et al., Structural Insight Into the Mechanism of Oxygen Activation and Substrate Selectivity of Flavin-Dependent N-Hydroxylating Monooxygenases. Biochemistry (2012)
- Release Date
- 2012-10-03
- Peptides
- L-ORNITHINE N5 MONOOXYGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A