- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 23 residues within 4Å:- Chain A: S.99, K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407, L.467
- Ligands: FAD.1, ORN.3, ORN.6
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:Q.256
- Hydrogen bonds: A:K.100, A:S.254, A:S.254, A:S.257, A:S.257, A:R.279, A:N.323, A:N.323, A:S.325, A:S.325
- Water bridges: A:S.229, A:G.255, A:G.255, A:S.257, A:R.279, A:R.279, A:G.406, A:G.406
- Salt bridges: A:R.279
- pi-Cation interactions: A:R.279, A:R.279
NAP.10: 23 residues within 4Å:- Chain B: S.99, K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407, L.467
- Ligands: FAD.9, ORN.11, ORN.14
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:Q.256
- Hydrogen bonds: B:K.100, B:S.254, B:S.254, B:S.257, B:S.257, B:R.279, B:N.323, B:N.323, B:S.325, B:S.325
- Water bridges: B:S.229, B:G.255, B:G.255, B:R.279, B:R.279, B:G.406, B:G.406, B:Y.407
- Salt bridges: B:R.279
- pi-Cation interactions: B:R.279, B:R.279
NAP.18: 23 residues within 4Å:- Chain C: S.99, K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407, L.467
- Ligands: FAD.17, ORN.19, ORN.22
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:Q.256
- Hydrogen bonds: C:K.100, C:S.254, C:S.254, C:S.257, C:S.257, C:R.279, C:N.323, C:N.323, C:S.325, C:S.325
- Water bridges: C:S.229, C:G.255, C:G.255, C:S.257, C:R.279, C:R.279, C:G.406, C:G.406
- Salt bridges: C:R.279
- pi-Cation interactions: C:R.279, C:R.279
NAP.26: 23 residues within 4Å:- Chain D: S.99, K.100, Q.102, R.144, P.217, G.253, S.254, G.255, Q.256, S.257, E.260, R.279, N.323, Y.324, S.325, A.404, T.405, G.406, Y.407, L.467
- Ligands: FAD.25, ORN.27, ORN.30
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:Q.256
- Hydrogen bonds: D:K.100, D:S.254, D:S.254, D:S.257, D:S.257, D:R.279, D:N.323, D:N.323, D:S.325, D:S.325
- Water bridges: D:S.229, D:G.255, D:G.255, D:R.279, D:R.279, D:G.406, D:G.406, D:Y.407
- Salt bridges: D:R.279
- pi-Cation interactions: D:R.279, D:R.279
- 12 x ORN: L-ornithine(Non-covalent)
ORN.3: 9 residues within 4Å:- Chain A: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.103, A:L.467
- Hydrogen bonds: A:N.293, A:N.323, A:S.469
- Salt bridges: A:K.107
ORN.6: 5 residues within 4Å:- Chain A: P.217, S.218, G.219, I.362
- Ligands: NAP.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:P.217
- Hydrogen bonds: A:S.218, A:G.219, A:I.362
- Water bridges: A:R.279, A:R.279
ORN.8: 6 residues within 4Å:- Chain A: P.49, Q.85, A.89, W.90, H.91
- Ligands: FAD.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.89
- Salt bridges: A:H.91
ORN.11: 9 residues within 4Å:- Chain B: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.103, B:L.467
- Hydrogen bonds: B:N.293, B:N.323, B:S.469
- Salt bridges: B:K.107
ORN.14: 5 residues within 4Å:- Chain B: P.217, S.218, G.219, I.362
- Ligands: NAP.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:P.217
- Hydrogen bonds: B:S.218, B:G.219, B:I.362
- Water bridges: B:R.279, B:R.279
ORN.16: 6 residues within 4Å:- Chain B: P.49, Q.85, A.89, W.90, H.91
- Ligands: FAD.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.89
- Salt bridges: B:H.91
ORN.19: 9 residues within 4Å:- Chain C: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.18
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.103, C:L.467
- Hydrogen bonds: C:N.293, C:N.323, C:S.469
- Salt bridges: C:K.107
ORN.22: 5 residues within 4Å:- Chain C: P.217, S.218, G.219, I.362
- Ligands: NAP.18
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:P.217
- Hydrogen bonds: C:S.218, C:G.219, C:I.362
- Water bridges: C:R.279, C:R.279
ORN.24: 6 residues within 4Å:- Chain C: P.49, Q.85, A.89, W.90, H.91
- Ligands: FAD.17
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.89
- Salt bridges: C:H.91
ORN.27: 9 residues within 4Å:- Chain D: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469
- Ligands: NAP.26
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.103, D:L.467
- Hydrogen bonds: D:N.293, D:N.323, D:S.469
- Salt bridges: D:K.107
ORN.30: 5 residues within 4Å:- Chain D: P.217, S.218, G.219, I.362
- Ligands: NAP.26
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:P.217
- Hydrogen bonds: D:S.218, D:G.219, D:I.362
- Water bridges: D:R.279, D:R.279
ORN.32: 6 residues within 4Å:- Chain D: P.49, Q.85, A.89, W.90, H.91
- Ligands: FAD.25
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.89
- Salt bridges: D:H.91
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: R.364, V.365, E.366, H.367, H.368
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.364, A:E.366, A:H.367, A:H.368
- Salt bridges: A:H.368
SO4.5: 5 residues within 4Å:- Chain A: H.126, G.129, R.130, L.131, I.132
6 PLIP interactions:1 interactions with chain C, 5 interactions with chain A- Hydrogen bonds: C:L.112, A:G.129, A:R.130, A:L.131, A:I.132
- Salt bridges: A:H.126
SO4.12: 5 residues within 4Å:- Chain B: R.364, V.365, E.366, H.367, H.368
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.364, B:H.367, B:H.367, B:H.368
- Salt bridges: B:H.368
SO4.13: 5 residues within 4Å:- Chain B: H.126, G.129, R.130, L.131, I.132
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:G.129, B:R.130, B:L.131, B:I.132, D:L.112
- Salt bridges: B:H.126
SO4.20: 5 residues within 4Å:- Chain C: R.364, V.365, E.366, H.367, H.368
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.364, C:E.366, C:H.367, C:H.368
- Salt bridges: C:H.368
SO4.21: 5 residues within 4Å:- Chain C: H.126, G.129, R.130, L.131, I.132
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:G.129, C:R.130, C:L.131, C:I.132, A:L.112
- Salt bridges: C:H.126
SO4.28: 5 residues within 4Å:- Chain D: R.364, V.365, E.366, H.367, H.368
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.364, D:H.367, D:H.367, D:H.368
- Salt bridges: D:H.368
SO4.29: 5 residues within 4Å:- Chain D: H.126, G.129, R.130, L.131, I.132
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:G.129, D:R.130, D:L.131, D:I.132, B:L.112
- Salt bridges: D:H.126
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 7 residues within 4Å:- Chain A: Y.336, M.339, Y.340, R.343, W.352
- Chain B: E.294
- Chain D: H.133
4 PLIP interactions:1 interactions with chain D, 1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: D:H.133, B:E.294, A:M.339, A:R.343
GOL.15: 7 residues within 4Å:- Chain A: E.294
- Chain B: Y.336, M.339, Y.340, R.343, W.352
- Chain C: H.133
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.336, B:M.339, B:R.343, A:E.294
GOL.23: 7 residues within 4Å:- Chain B: H.133
- Chain C: Y.336, M.339, Y.340, R.343, W.352
- Chain D: E.294
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: C:M.339, C:R.343, D:E.294, B:H.133
GOL.31: 7 residues within 4Å:- Chain A: H.133
- Chain C: E.294
- Chain D: Y.336, M.339, Y.340, R.343, W.352
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:Y.336, D:M.339, D:R.343, C:E.294
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Franceschini, S. et al., Structural Insight Into the Mechanism of Oxygen Activation and Substrate Selectivity of Flavin-Dependent N-Hydroxylating Monooxygenases. Biochemistry (2012)
- Release Date
- 2012-10-03
- Peptides
- L-ORNITHINE N5 MONOOXYGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 12 x ORN: L-ornithine(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Franceschini, S. et al., Structural Insight Into the Mechanism of Oxygen Activation and Substrate Selectivity of Flavin-Dependent N-Hydroxylating Monooxygenases. Biochemistry (2012)
- Release Date
- 2012-10-03
- Peptides
- L-ORNITHINE N5 MONOOXYGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A