SMTL ID : 4b6c.1 (1 other biounit)

Structure of the M. smegmatis GyrB ATPase domain in complex with an aminopyrazinamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x B5U: 6-(3,4-dimethylphenyl)-3-[[4-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]amino]pyrazine-2-carboxamide(Non-covalent)

B5U.1: 16 residues within 4Å: Chain A: N.45, A.46, E.49, D.72, R.75, G.76, I.77, P.78, D.90, V.92, Q.95, V.96, S.99, V.101, R.114, T.142 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.45, A:I.77, A:V.92, A:V.96, A:V.101 Hydrogen bonds: A:E.49, A:D.72, A:T.142 Water bridges: A:A.46, A:A.46, A:E.49, A:E.49, A:E.49, A:D.72, A:R.114

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.73, G.74, T.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.74 Water bridges: A:T.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shirude, P.S. et al., Aminopyrazinamides: novel and specific GyrB inhibitors that kill replicating and nonreplicating Mycobacterium tuberculosis. ACS Chem. Biol. (2013)

Release Date

2013-01-23

Peptides

DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit B

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