SMTL ID : 4b6z.2 (3 other biounits)

Crystal structure of metallo-carboxypeptidase from Burkholderia cenocepacia

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.192, E.195, H.289, G.290 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.192, A:E.195, A:E.195, A:H.289, H2O.7

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: S.28, N.29, F.30, G.33, R.51 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.30, A:F.30, A:R.51 Water bridges: A:S.28, A:N.29, A:I.35 GOL.3: 4 residues within 4Å: Chain A: S.94, V.107, P.108, E.377 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.94 Water bridges: A:T.109, A:T.109

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: K.223, D.226, R.227, L.398, D.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.226, A:D.226, A:R.227, A:D.402 EDO.5: 1 residues within 4Å: Chain A: R.160 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.160 Water bridges: A:R.160, A:R.160

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: N.54, R.55, H.243 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 6 residues within 4Å: Chain A: H.192, R.247, N.254, N.256, R.257, H.289 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.254 Water bridges: A:E.365 Salt bridges: A:H.192, A:R.247, A:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rimsa, V. et al., High-Resolution Structure of the M14-Type Cytosolic Carboxypeptidase from Burkholderia Cenocepacia Refined Exploiting Pdb_Redo Strategies. Acta Crystallogr.,Sect.D (2014)

Release Date

2013-03-27

Peptides

FAMILY M14 UNASSIGNED PEPTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

FAMILY M14 UNASSIGNED PEPTIDASE

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