SMTL ID : 4b7b.1

Eg5-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: R.24, R.26, P.27, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, E.118 Ligands: CD.9, CL.15 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.24, A:G.108, A:T.109, A:G.110, A:K.111, A:T.112, A:F.113, A:E.118 Water bridges: A:T.107, A:K.111 Salt bridges: A:K.111 pi-Stacking: A:F.113, A:F.113

11 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.2: 2 residues within 4Å: Chain A: H.354 Ligands: CL.12 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.354, H2O.7, H2O.7 CD.3: 6 residues within 4Å: Chain A: C.25, V.41, C.43 Ligands: CD.4, CL.11, CL.13 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.25, A:C.43, H2O.1 CD.4: 6 residues within 4Å: Chain A: C.25, R.26, P.27 Ligands: CD.3, CL.13, CA.25 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.25, A:C.25, A:R.26, H2O.1 CD.5: 3 residues within 4Å: Chain A: C.87, D.91 Ligands: CO.20 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.87, A:D.91, A:D.91, H2O.2, H2O.2 CD.6: 5 residues within 4Å: Chain A: E.145, D.149 Ligands: CL.14, CO.22, CO.23 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.145, A:D.149, A:D.149, H2O.4 CD.7: 2 residues within 4Å: Chain A: H.141, D.208 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.141, A:D.208, H2O.4, H2O.4 CD.8: 3 residues within 4Å: Chain A: E.313 Ligands: CL.16, CL.17 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.313, A:E.313 CD.9: 3 residues within 4Å: Chain A: T.112, D.265 Ligands: ADP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.112, H2O.3, H2O.8, H2O.8 CD.10: 5 residues within 4Å: Chain A: T.203, H.205, E.209 Ligands: CL.18, CL.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.203, A:H.205, A:E.209, A:E.209 CD.26: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CD.27: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 5 residues within 4Å: Chain A: V.41, E.42, C.43 Ligands: CD.3, CL.13 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: H.354 Ligands: CD.2 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain A: C.25, G.73, A.74 Ligands: CD.3, CD.4, CL.11 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: E.145 Ligands: CD.6, CO.22 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain A: T.76 Ligands: ADP.1 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: E.313 Ligands: CD.8, CL.17 Ligand excluded by PLIP CL.17: 6 residues within 4Å: Chain A: R.297, H.308, P.310, E.313 Ligands: CD.8, CL.16 Ligand excluded by PLIP CL.18: 5 residues within 4Å: Chain A: H.205, E.209 Ligands: CD.10, CL.19, CL.28 Ligand excluded by PLIP CL.19: 6 residues within 4Å: Chain A: I.202, T.203, H.205, E.209 Ligands: CD.10, CL.18 Ligand excluded by PLIP CL.28: 1 residues within 4Å: Ligands: CL.18 Ligand excluded by PLIP

5 x CO: COBALT (II) ION(Non-covalent)

CO.20: 3 residues within 4Å: Chain A: D.91, K.146 Ligands: CD.5 No protein-ligand interaction detected (PLIP) CO.21: 1 residues within 4Å: Chain A: D.186 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.186, H2O.8 CO.22: 4 residues within 4Å: Chain A: E.145, K.207 Ligands: CD.6, CL.14 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.145, H2O.8 CO.23: 3 residues within 4Å: Chain A: E.145, D.149 Ligands: CD.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.145, A:D.149, H2O.4, H2O.4 CO.24: 3 residues within 4Å: Chain A: I.163, E.166, S.291 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.25: 5 residues within 4Å: Chain A: R.26, P.27, F.28, P.338 Ligands: CD.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talapatra, S.K. et al., The Mitotic Kinesin Eg5 Overcomes Inhibition to the Phase I/II Clinical Candidate Sb743921 by an Allosteric Resistance Mechanism. J.Med.Chem. (2013)

Release Date

2013-07-31

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KINESIN-LIKE PROTEIN KIF11