SMTL ID : 4b7i.1

Crystal Structure of Human IgG Fc Bearing Hybrid-type Glycans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-FUC.1: 10 residues within 4Å: Chain A: F.5, F.7, K.10, V.28, D.29, Q.59, Y.60, N.61, T.63, R.65 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.60 Hydrogen bonds: A:R.65

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain B: M.16, I.17, S.18 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bowden, T.A. et al., Chemical and Structural Analysis of an Antibody Folding Intermediate Trapped During Glycan Biosynthesis. J.Am.Chem.Soc. (2012)

Release Date

2012-10-17

Peptides

IG GAMMA-1 CHAIN C REGION: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IG GAMMA-1 CHAIN C REGION