SMTL ID : 4b8b.1

N-Terminal domain of the yeast Not1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

29 x AU: GOLD ION(Non-covalent)(Non-functional Binders)

AU.1: 4 residues within 4Å: Chain A: P.274, N.307, F.308, S.311 Ligand excluded by PLIP AU.2: 5 residues within 4Å: Chain A: S.354, P.355, V.358, C.399, P.400 Ligand excluded by PLIP AU.3: 4 residues within 4Å: Chain A: A.306, C.336, I.340, L.381 Ligand excluded by PLIP AU.4: 3 residues within 4Å: Chain A: N.88, V.89, R.92 Ligand excluded by PLIP AU.5: 2 residues within 4Å: Chain A: M.451, C.489 Ligand excluded by PLIP AU.6: 3 residues within 4Å: Chain A: M.245, L.262, K.289 Ligand excluded by PLIP AU.7: 3 residues within 4Å: Chain A: L.506, K.551, Q.555 Ligand excluded by PLIP AU.8: 2 residues within 4Å: Chain A: A.303, K.332 Ligand excluded by PLIP AU.9: 1 residues within 4Å: Chain A: F.207 Ligand excluded by PLIP AU.10: 2 residues within 4Å: Chain A: R.379, A.419 Ligand excluded by PLIP AU.11: 2 residues within 4Å: Chain A: N.168, C.170 Ligand excluded by PLIP AU.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP AU.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP AU.14: 1 residues within 4Å: Chain A: A.83 Ligand excluded by PLIP AU.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP AU.16: 3 residues within 4Å: Chain B: P.274, N.307, S.311 Ligand excluded by PLIP AU.17: 2 residues within 4Å: Chain B: F.207, F.230 Ligand excluded by PLIP AU.18: 4 residues within 4Å: Chain B: A.306, C.336, I.340, L.381 Ligand excluded by PLIP AU.19: 2 residues within 4Å: Chain B: S.129, G.169 Ligand excluded by PLIP AU.20: 3 residues within 4Å: Chain B: C.489, H.492, A.493 Ligand excluded by PLIP AU.21: 3 residues within 4Å: Chain B: K.466, D.467, E.470 Ligand excluded by PLIP AU.22: 3 residues within 4Å: Chain B: N.168, G.169, C.170 Ligand excluded by PLIP AU.23: 3 residues within 4Å: Chain B: P.355, D.359, Q.405 Ligand excluded by PLIP AU.24: 2 residues within 4Å: Chain B: R.535, R.539 Ligand excluded by PLIP AU.25: 2 residues within 4Å: Chain B: M.245, K.289 Ligand excluded by PLIP AU.26: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP AU.27: 1 residues within 4Å: Chain B: K.350 Ligand excluded by PLIP AU.28: 1 residues within 4Å: Chain B: A.303 Ligand excluded by PLIP AU.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basquin, J. et al., Architecture of the Nuclease Module of the Yeast Ccr4-not Complex: The not1-Caf1-Ccr4 Interaction. Mol.Cell (2012)

Release Date

2012-11-21

Peptides

GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1