SMTL ID : 4b8v.1

Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: T.106, E.107, N.133 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: T.106, E.107, N.133 No protein-ligand interaction detected (PLIP)

2 x NDG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG-NAG-NAG-NAG.2: 25 residues within 4Å: Chain A: V.46, V.47, D.50, T.51, L.52, T.53, P.75, N.76, L.77, I.78, E.79, L.80, I.176, V.177, A.178, G.179, D.180, L.181, F.182, V.183, I.193, P.205, S.206, K.207, L.208 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.176 Hydrogen bonds: A:L.80, A:G.179, A:L.208, A:L.52, A:T.53, A:N.76 Water bridges: A:P.75, A:N.76, A:N.76, A:D.131, A:D.131 NDG-NAG-NAG-NAG.5: 25 residues within 4Å: Chain B: V.46, V.47, D.50, T.51, L.52, T.53, P.75, N.76, L.77, I.78, E.79, L.80, I.176, V.177, A.178, G.179, D.180, L.181, F.182, V.183, I.193, P.205, S.206, K.207, L.208 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.176 Hydrogen bonds: B:L.80, B:G.179, B:L.208, B:L.52, B:T.53, B:T.53, B:N.76 Water bridges: B:P.75, B:N.76, B:N.76, B:D.131, B:D.131, B:D.131

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: E.107, C.109, P.164, N.222 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.107, A:N.222 Water bridges: A:E.107, A:E.107, A:E.107, A:E.107 NAG.6: 4 residues within 4Å: Chain B: E.107, C.109, P.164, N.222 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.107, B:N.222 Water bridges: B:E.107, B:E.107, B:E.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanchez-Vallet, A. et al., Fungal Effector Ecp6 Outcompetes Host Immune Receptor for Chitin Binding Through Intrachain Lysm Dimerization. Elife (2013)

Release Date

2013-07-17

Peptides

EXTRACELLULAR PROTEIN 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

EXTRACELLULAR PROTEIN 6

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