SMTL ID : 4b8y.1

Ferrichrome-bound FhuD2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLY- GLY- GLY- AHO- AHO- AHO: VIRULENCE FACTOR(Non-covalent)

GLY-GLY-GLY-AHO-AHO-AHO.1: 14 residues within 4Å: Chain A: Y.85, T.87, Y.105, F.161, Y.166, Y.168, W.172, R.174, W.200, W.254 Ligands: EDO.3, EDO.9, EDO.10, FE.13 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.85, A:Y.105, A:F.161, A:Y.166, A:Y.168, A:W.200 Hydrogen bonds: A:R.174, A:R.174 Water bridges: A:Y.105, A:Y.105

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.51, K.61, K.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.65 EDO.3: 9 residues within 4Å: Chain A: T.31, Y.105, W.172, G.173, E.177, W.254, Y.255, N.256 Ligands: GLY-GLY-GLY-AHO-AHO-AHO.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.31, A:Y.105, A:E.177 Water bridges: A:N.256 EDO.4: 4 residues within 4Å: Chain A: G.69, D.70, V.71, E.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.69, A:V.71, A:E.72 EDO.5: 6 residues within 4Å: Chain A: M.10, V.16, Q.95, P.99, T.100, V.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.95, A:T.100 EDO.6: 6 residues within 4Å: Chain A: D.159, E.160, F.161, Y.168, R.174, A.250 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.160, A:R.174 Water bridges: A:R.174, A:A.250 EDO.7: 4 residues within 4Å: Chain A: Q.48, I.66, G.67, D.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.67, A:D.70, A:D.70 EDO.8: 4 residues within 4Å: Chain A: N.106, K.109, N.171, W.172 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.171, A:N.171 EDO.9: 7 residues within 4Å: Chain A: P.30, N.47, Q.49, D.68, Y.85, W.254 Ligands: GLY-GLY-GLY-AHO-AHO-AHO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.68 Water bridges: A:N.47 EDO.10: 3 residues within 4Å: Chain A: A.198, W.200 Ligands: GLY-GLY-GLY-AHO-AHO-AHO.1 No protein-ligand interaction detected (PLIP) EDO.11: 7 residues within 4Å: Chain A: Y.8, M.10, D.11, V.101, V.102, H.108, M.116 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.8, A:D.11, A:H.108 Water bridges: A:D.12, A:V.102

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 4 residues within 4Å: Chain A: Q.113, Q.114, L.117, D.257 Ligand excluded by PLIP

1 x FE: FE (III) ION(Non-covalent)

FE.13: 4 residues within 4Å: Chain A: W.172 Ligands: GLY-GLY-GLY-AHO-AHO-AHO.1, GLY-GLY-GLY-AHO-AHO-AHO.1, GLY-GLY-GLY-AHO-AHO-AHO.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mariotti, P. et al., Structural and Functional Characterization of the Staphylococcus Aureus Virulence Factor and Vaccine Candidate Fhud2. Biochem.J. (2013)

Release Date

2012-11-21

Peptides

FHUD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FHUD2