SMTL ID : 4b8z.2 (3 other biounits)

Crystal structure of human GDP-L-fucose synthase with bound NADP and GDP, rhombohedral crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.14, G.15, S.16, G.17, L.18, V.19, S.42, S.43, A.46, D.47, L.48, L.69, A.70, A.71, V.73, M.93, C.112, L.113, S.114, Y.143, K.147, P.170, T.171, N.172, V.173, H.186, R.320 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.173 Hydrogen bonds: A:G.14, A:S.16, A:S.16, A:L.18, A:V.19, A:S.42, A:S.43, A:S.43, A:D.47, A:L.48, A:L.69, A:A.71, A:Y.143, A:V.173 Water bridges: A:S.42 Salt bridges: A:R.320

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 18 residues within 4Å: Chain A: G.75, L.76, F.77, N.172, G.185, H.186, V.187, G.190, K.194, V.207, W.208, G.209, P.213, R.215, I.252, S.276, D.277, K.282 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:L.76, A:N.172, A:N.172, A:G.185, A:G.185, A:H.186, A:V.187, A:W.208, A:S.276, A:D.277 Salt bridges: A:H.186, A:R.215, A:K.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of Human Gdp-L-Fucose Synthase with Bound Nadp and Gdp, Rhombohedral Crystal Form. To be Published

Release Date

2013-02-06

Peptides

GDP-L-FUCOSE SYNTHASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GDP-L-FUCOSE SYNTHASE

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