SMTL ID : 4b9t.1

Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dG DNA lesion -dC basepair in the post-insertion site.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.396, Y.397, D.573 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.396

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.425, R.445, K.449 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.425 Salt bridges: A:R.445, A:K.449 SO4.3: 1 residues within 4Å: Chain A: R.420 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.420 Salt bridges: A:R.420, A:K.427

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gehrke, T.H. et al., Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions. Nat.Chem.Biol. (2013)

Release Date

2013-04-17

Peptides

DNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA POLYMERASE

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