SMTL ID : 4b9w.1

Structure of extended Tudor domain TD3 from mouse TDRD1 in complex with MILI peptide containing dimethylarginine 45.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: V.23, C.24, M.25, M.26, Q.152 Chain C: R.8, G.9, L.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.24, A:M.26, A:M.26, A:Q.152, A:Q.152 GOL.2: 8 residues within 4Å: Chain B: V.23, C.24, M.25, M.26, Q.152 Chain D: R.8, G.9, L.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:C.24, B:M.26, B:Q.152, B:Q.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathioudakis, N. et al., The multiple Tudor domain-containing protein TDRD1 is a molecular scaffold for mouse Piwi proteins and piRNA biogenesis factors. Rna (2012)

Release Date

2012-10-17

Peptides

TUDOR DOMAIN-CONTAINING PROTEIN 1: AB
PIWI-LIKE PROTEIN 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

D
S

TUDOR DOMAIN-CONTAINING PROTEIN 1

PIWI-LIKE PROTEIN 2