SMTL ID : 4bac.1

prototype foamy virus strand transfer complexes on product DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.26 Å

Oligo State

homo-tetramer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.66, H.70, C.100, C.103 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.66, A:H.70, A:C.100, A:C.103 ZN.4: 4 residues within 4Å: Chain F: H.66, H.70, C.100, C.103 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.66, F:H.70, F:C.100, F:C.103

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.132, Y.133, D.189, F.194 Chain J: C.17 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.132, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain B: D.132, Y.133, D.189 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.132, B:D.189 MG.5: 5 residues within 4Å: Chain E: C.17 Chain F: D.132, Y.133, D.189, F.194 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.132, H2O.1, H2O.1 MG.6: 3 residues within 4Å: Chain G: D.132, Y.133, D.189 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.132, G:D.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Z. et al., Assembly of Prototype Foamy Virus Strand Transfer Complexes on Product DNA Bypassing Catalysis of Integration. Protein Sci. (2012)

Release Date

2012-10-10

Peptides

INTEGRASE: ABFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
A

G
B

INTEGRASE