SMTL ID : 4bbm.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE HUMAN CDKL2 KINASE DOMAIN WITH BOUND TCS 2312

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x TC0: 4'-[5-[[3-[(CYCLOPROPYLAMINO)METHYL]PHENYL]AMINO]-1H-PYRAZOL-3-YL]-[1,1'-BIPHENYL]-2,4-DIOL(Non-covalent)

TC0.1: 18 residues within 4Å: Chain A: V.33, Y.38, V.41, A.54, V.87, F.103, E.104, F.105, V.106, D.107, H.108, T.109, D.112, L.156, C.166, D.167, F.170, A.171 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.38, A:Y.38, A:V.41, A:F.103, A:F.103, A:F.103, A:F.103, A:T.109, A:L.156, A:L.156 Hydrogen bonds: A:E.104, A:V.106, A:V.106, A:D.167, A:F.170, A:A.171 pi-Stacking: A:Y.38

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: D.107, Q.159 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: L.111, K.151, P.152, E.153, Y.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.153, A:Y.190, A:Y.190 EDO.4: 7 residues within 4Å: Chain A: R.148, D.149, I.150, T.187, Y.190, R.191, L.195 3 PLIP interactions: 3 interactions with chain A Water bridges: A:I.150, A:I.150, A:V.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Canning, P. et al., CDKL Family Kinases Have Evolved Distinct Structural Features and Ciliary Function. Cell Rep (2018)

Release Date

2012-10-17

Peptides

CYCLIN-DEPENDENT KINASE-LIKE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYCLIN-DEPENDENT KINASE-LIKE 2

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