SMTL ID : 4bca.1 (1 other biounit)

MAMMALIAN ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE: Tyr578Phe mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: W.96, H.189, P.234, I.235, G.236, G.237, G.238, T.239, S.240, V.241, G.244, L.245, T.260, P.302, D.303, S.304, S.308, T.309, G.311, G.312, W.313, S.315, T.316, A.318, S.319, E.368, G.369, G.372, V.373, I.374, A.512, H.616, N.654, N.656 Ligands: CL.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.96, A:W.96, A:H.189, A:V.241, A:D.303, A:A.512 Hydrogen bonds: A:G.236, A:G.237, A:G.238, A:T.239, A:T.239, A:S.240, A:D.303, A:S.304, A:S.304, A:T.309, A:S.315, A:T.316, A:S.319, A:S.319, A:G.369, A:I.374, A:I.374, A:N.654, A:N.656 Water bridges: A:G.312, A:G.312, A:T.316, A:T.316, A:H.617 pi-Cation interactions: A:H.616, A:H.617 FAD.5: 35 residues within 4Å: Chain B: W.96, H.189, P.234, I.235, G.236, G.237, G.238, T.239, S.240, V.241, G.244, L.245, T.260, P.302, D.303, S.304, S.308, T.309, G.311, G.312, W.313, S.315, T.316, A.318, S.319, E.368, G.369, G.372, V.373, I.374, A.512, H.616, N.654, N.656 Ligands: CL.6 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:W.96, B:W.96, B:H.189, B:V.241, B:D.303, B:A.512 Hydrogen bonds: B:G.236, B:G.237, B:G.238, B:T.239, B:T.239, B:T.239, B:S.240, B:D.303, B:S.304, B:S.304, B:T.309, B:G.312, B:S.315, B:S.319, B:S.319, B:I.374, B:I.374, B:N.654 Water bridges: B:T.260, B:T.316, B:T.316, B:G.369, B:H.617, B:N.656

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: F.578, H.616, H.617 Ligands: FAD.1 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: F.578, H.617 Ligands: FAD.5 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.323, Y.571, D.572 Chain B: K.380 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.572, A:D.572 Water bridges: A:A.573 Salt bridges: A:K.323, B:K.380 SO4.4: 7 residues within 4Å: Chain A: I.325, P.415, A.416, F.470, E.471, V.477, H.480 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.416, A:E.471, A:E.471 Salt bridges: A:H.480 SO4.7: 8 residues within 4Å: Chain B: I.325, A.414, P.415, A.416, L.469, F.470, E.471, H.480 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.416, B:E.471 Salt bridges: B:H.480 SO4.8: 5 residues within 4Å: Chain A: K.380 Chain B: K.323, T.570, Y.571, D.572 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.572, B:D.572 Water bridges: B:K.323, B:A.573 Salt bridges: B:K.323, A:K.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nenci, S. et al., Precursor of Ether Phospholipids is Synthesized by a Flavoenzyme Through Covalent Catalysis. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-07

Peptides

ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL

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