SMTL ID : 4bcr.2 (1 other biounit)

Structure of PPARalpha in complex with WY14643

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x WY1: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID(Non-covalent)

WY1.1: 15 residues within 4Å: Chain A: C.82, Q.83, T.85, S.86, T.89, Y.120, F.124, L.127, M.136, L.137, M.161, K.164, H.246, L.266, Y.270 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.85, A:L.127 Hydrogen bonds: A:S.86, A:S.86 Salt bridges: A:H.246 WY1.3: 11 residues within 4Å: Chain A: I.47, L.53, E.57, I.69, K.72, R.77, I.78, H.80, C.81, C.84, I.145 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.47, A:L.53, A:E.57, A:I.78, A:I.145 Hydrogen bonds: A:E.57 Salt bridges: A:K.72, A:H.80 Halogen bonds: A:C.84

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: P.44, F.144 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernardes, A. et al., Molecular Mechanism of Peroxisome Proliferator-Activated Receptor Alpha Activation by Wy14643: A New Mode of Ligand Recognition and Receptor Stabilization. J.Mol.Biol. (2013)

Release Date

2013-05-29

Peptides

PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA

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