SMTL ID : 4bdp.1

CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain C: H.386, R.406, K.410 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.406, C:K.410 SO4.2: 2 residues within 4Å: Chain C: E.521, R.523 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.523 SO4.3: 4 residues within 4Å: Chain C: A.2, M.3, A.4, R.47 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.4 Salt bridges: C:R.47

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.4: 3 residues within 4Å: Chain C: D.357, Y.358, D.534 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.357, C:Y.358 MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiefer, J.R. et al., Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal. Nature (1998)

Release Date

1999-01-13

Peptides

PROTEIN (DNA POLYMERASE I): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

PROTEIN (DNA POLYMERASE I)

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