SMTL ID : 4bdt.2 (2 other biounits)

Human acetylcholinesterase in complex with huprine W and fasciculin 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-6-6-mer

Ligands

6 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 4 residues within 4Å: Chain A: G.345, S.347, D.349, N.350 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.349 Hydrogen bonds: A:N.350, A:G.345 NAG-NAG-FUL.14: 4 residues within 4Å: Chain C: G.345, S.347, D.349, N.350 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:D.349 Hydrogen bonds: C:N.350, C:G.345 NAG-NAG-FUL.27: 4 residues within 4Å: Chain E: G.345, S.347, D.349, N.350 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:D.349 Hydrogen bonds: E:N.350, E:G.345 NAG-NAG-FUL.40: 4 residues within 4Å: Chain G: G.345, S.347, D.349, N.350 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:D.349 Hydrogen bonds: G:N.350, G:G.345 NAG-NAG-FUL.53: 4 residues within 4Å: Chain I: G.345, S.347, D.349, N.350 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:D.349 Hydrogen bonds: I:N.350, I:G.345 NAG-NAG-FUL.66: 4 residues within 4Å: Chain K: G.345, S.347, D.349, N.350 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:D.349 Hydrogen bonds: K:N.350, K:G.345

6 x HUW: HUPRINE W(Non-covalent)

HUW.2: 10 residues within 4Å: Chain A: W.86, G.121, G.122, E.202, S.203, Y.337, F.338, W.439, H.447, Y.449 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.86, A:W.86, A:W.439, A:Y.449 Hydrogen bonds: A:G.121, A:G.122, A:S.203, A:S.203 Water bridges: A:T.83, A:Y.341 pi-Stacking: A:W.86, A:W.86, A:Y.337 HUW.15: 10 residues within 4Å: Chain C: W.86, G.121, G.122, E.202, S.203, Y.337, F.338, W.439, H.447, Y.449 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:W.86, C:W.86, C:W.439, C:Y.449 Hydrogen bonds: C:G.121, C:G.122, C:S.203, C:S.203 Water bridges: C:D.74, C:Y.341 pi-Stacking: C:W.86, C:W.86, C:Y.337 HUW.28: 10 residues within 4Å: Chain E: W.86, G.121, G.122, E.202, S.203, Y.337, F.338, W.439, H.447, Y.449 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:W.86, E:W.86, E:W.439, E:Y.449 Hydrogen bonds: E:G.121, E:G.122, E:S.203, E:S.203 Water bridges: E:D.74, E:Y.341 pi-Stacking: E:W.86, E:W.86, E:Y.337 HUW.41: 10 residues within 4Å: Chain G: W.86, G.121, G.122, E.202, S.203, Y.337, F.338, W.439, H.447, Y.449 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:W.86, G:W.86, G:W.439, G:Y.449 Hydrogen bonds: G:G.121, G:G.122, G:S.203, G:S.203 Water bridges: G:T.83, G:Y.341 pi-Stacking: G:W.86, G:W.86, G:Y.337 HUW.54: 10 residues within 4Å: Chain I: W.86, G.121, G.122, E.202, S.203, Y.337, F.338, W.439, H.447, Y.449 13 PLIP interactions: 13 interactions with chain I Hydrophobic interactions: I:W.86, I:W.86, I:W.439, I:Y.449 Hydrogen bonds: I:G.121, I:G.122, I:S.203, I:S.203 Water bridges: I:T.83, I:Y.341 pi-Stacking: I:W.86, I:W.86, I:Y.337 HUW.67: 10 residues within 4Å: Chain K: W.86, G.121, G.122, E.202, S.203, Y.337, F.338, W.439, H.447, Y.449 13 PLIP interactions: 13 interactions with chain K Hydrophobic interactions: K:W.86, K:W.86, K:W.439, K:Y.449 Hydrogen bonds: K:G.121, K:G.122, K:S.203, K:S.203 Water bridges: K:D.74, K:Y.341 pi-Stacking: K:W.86, K:W.86, K:Y.337

60 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: M.241, G.242 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.417 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.356 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.224 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: P.108, R.143 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: R.136 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.219, D.320 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: R.16, G.58 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: R.525, A.526, Q.527, A.528 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: E.376 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain C: M.241, G.242 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain C: R.417 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain C: R.356 Ligand excluded by PLIP CL.19: 1 residues within 4Å: Chain C: R.224 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain C: P.108, R.143 Ligand excluded by PLIP CL.21: 1 residues within 4Å: Chain C: R.136 Ligand excluded by PLIP CL.22: 2 residues within 4Å: Chain C: R.219, D.320 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain C: R.16, G.58 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain C: R.525, A.526, Q.527, A.528 Ligand excluded by PLIP CL.25: 1 residues within 4Å: Chain C: E.376 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain E: M.241, G.242 Ligand excluded by PLIP CL.30: 1 residues within 4Å: Chain E: R.417 Ligand excluded by PLIP CL.31: 1 residues within 4Å: Chain E: R.356 Ligand excluded by PLIP CL.32: 1 residues within 4Å: Chain E: R.224 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain E: P.108, R.143 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain E: R.136 Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain E: R.219, D.320 Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain E: R.16, G.58 Ligand excluded by PLIP CL.37: 4 residues within 4Å: Chain E: R.525, A.526, Q.527, A.528 Ligand excluded by PLIP CL.38: 1 residues within 4Å: Chain E: E.376 Ligand excluded by PLIP CL.42: 2 residues within 4Å: Chain G: M.241, G.242 Ligand excluded by PLIP CL.43: 1 residues within 4Å: Chain G: R.417 Ligand excluded by PLIP CL.44: 1 residues within 4Å: Chain G: R.356 Ligand excluded by PLIP CL.45: 1 residues within 4Å: Chain G: R.224 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain G: P.108, R.143 Ligand excluded by PLIP CL.47: 1 residues within 4Å: Chain G: R.136 Ligand excluded by PLIP CL.48: 2 residues within 4Å: Chain G: R.219, D.320 Ligand excluded by PLIP CL.49: 2 residues within 4Å: Chain G: R.16, G.58 Ligand excluded by PLIP CL.50: 4 residues within 4Å: Chain G: R.525, A.526, Q.527, A.528 Ligand excluded by PLIP CL.51: 1 residues within 4Å: Chain G: E.376 Ligand excluded by PLIP CL.55: 2 residues within 4Å: Chain I: M.241, G.242 Ligand excluded by PLIP CL.56: 1 residues within 4Å: Chain I: R.417 Ligand excluded by PLIP CL.57: 1 residues within 4Å: Chain I: R.356 Ligand excluded by PLIP CL.58: 1 residues within 4Å: Chain I: R.224 Ligand excluded by PLIP CL.59: 2 residues within 4Å: Chain I: P.108, R.143 Ligand excluded by PLIP CL.60: 1 residues within 4Å: Chain I: R.136 Ligand excluded by PLIP CL.61: 2 residues within 4Å: Chain I: R.219, D.320 Ligand excluded by PLIP CL.62: 2 residues within 4Å: Chain I: R.16, G.58 Ligand excluded by PLIP CL.63: 4 residues within 4Å: Chain I: R.525, A.526, Q.527, A.528 Ligand excluded by PLIP CL.64: 1 residues within 4Å: Chain I: E.376 Ligand excluded by PLIP CL.68: 2 residues within 4Å: Chain K: M.241, G.242 Ligand excluded by PLIP CL.69: 1 residues within 4Å: Chain K: R.417 Ligand excluded by PLIP CL.70: 1 residues within 4Å: Chain K: R.356 Ligand excluded by PLIP CL.71: 1 residues within 4Å: Chain K: R.224 Ligand excluded by PLIP CL.72: 2 residues within 4Å: Chain K: P.108, R.143 Ligand excluded by PLIP CL.73: 1 residues within 4Å: Chain K: R.136 Ligand excluded by PLIP CL.74: 2 residues within 4Å: Chain K: R.219, D.320 Ligand excluded by PLIP CL.75: 2 residues within 4Å: Chain K: R.16, G.58 Ligand excluded by PLIP CL.76: 4 residues within 4Å: Chain K: R.525, A.526, Q.527, A.528 Ligand excluded by PLIP CL.77: 1 residues within 4Å: Chain K: E.376 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 4 residues within 4Å: Chain A: T.504, A.505, G.506, A.507 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.504, A:A.505, A:G.506, A:A.507 SO4.26: 4 residues within 4Å: Chain C: T.504, A.505, G.506, A.507 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.504, C:A.505, C:G.506, C:A.507 SO4.39: 4 residues within 4Å: Chain E: T.504, A.505, G.506, A.507 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:T.504, E:A.505, E:G.506, E:A.507 SO4.52: 4 residues within 4Å: Chain G: T.504, A.505, G.506, A.507 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:T.504, G:A.505, G:G.506, G:A.507 SO4.65: 4 residues within 4Å: Chain I: T.504, A.505, G.506, A.507 4 PLIP interactions: 4 interactions with chain I Hydrogen bonds: I:T.504, I:A.505, I:G.506, I:A.507 SO4.78: 4 residues within 4Å: Chain K: T.504, A.505, G.506, A.507 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:T.504, K:A.505, K:G.506, K:A.507

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nachon, F. et al., Crystal structures of human cholinesterases in complex with huprine W and tacrine: elements of specificity for anti-Alzheimer's drugs targeting acetyl- and butyryl-cholinesterase. Biochem. J. (2013)

Release Date

2013-05-29

Peptides

ACETYLCHOLINESTERASE: ACEGIK
FASCICULIN-2: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

ACETYLCHOLINESTERASE

FASCICULIN-2

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