SMTL ID : 4bdv.1

CRYSTAL STRUCTURE OF A TRUNCATED B-DOMAIN HUMAN FACTOR VIII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.98 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.239, H.317 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA- BMA: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-BMA.2: 8 residues within 4Å: Chain B: V.224, T.225, Q.291, N.471, I.492, N.494, P.495 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.492 Hydrogen bonds: B:Q.291

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: H.232, H.267, C.310, I.312, H.315, M.320 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.267, A:C.310, A:H.315

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 7 residues within 4Å: Chain A: K.107, S.109, E.110, D.116, E.122, D.125, D.126 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.107, A:D.116, A:D.125, A:D.125, A:D.126

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: T.292, F.293, L.294 Chain B: M.326, N.330 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.330 EDO.7: 4 residues within 4Å: Chain B: H.220, R.222, S.472 Ligands: NAG-NAG-BMA-BMA-BMA.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.472, B:S.472

1 x CU1: COPPER (I) ION(Non-covalent)

CU1.6: 4 residues within 4Å: Chain B: H.307, C.353, I.355, H.358 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.307, B:C.353, B:H.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Svensson, L.A. et al., Evaluation of the Metal Binding Sites in a Recombinant Coagulation Factor Viii Identifies Two Sites with Unique Metal Binding Properties. Biol.Chem. (2013)

Release Date

2013-05-15

Peptides

FACTOR VIIIA HEAVY CHAIN, 92 KDA ISOFORM, B DOMAIN: A
FACTOR VIIIA LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FACTOR VIIIA HEAVY CHAIN, 92 KDA ISOFORM, B DOMAIN

FACTOR VIIIA LIGHT CHAIN