SMTL ID : 4be4.1

Closed conformation of O. piceae sterol esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Y.306, N.358, K.364 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.364 Hydrogen bonds: A:Y.306, A:Y.306, A:Y.306, A:N.358 NAG.2: 5 residues within 4Å: Chain A: A.255, P.256, Y.375, N.376, R.544 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.255, A:Y.375 Hydrogen bonds: A:N.376 Water bridges: A:N.376, A:R.544, A:R.544

6 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 5 residues within 4Å: Chain A: G.114, T.116, N.118, S.119 Ligands: DIO.6 No protein-ligand interaction detected (PLIP) DIO.4: 4 residues within 4Å: Chain A: R.190, I.191, E.194, Y.229 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.190 DIO.5: 2 residues within 4Å: Chain A: T.116, S.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.117 Water bridges: A:S.117 DIO.6: 6 residues within 4Å: Chain A: P.112, A.113, G.114, T.115, P.155 Ligands: DIO.3 No protein-ligand interaction detected (PLIP) DIO.7: 7 residues within 4Å: Chain A: V.252, P.253, F.374, M.421, T.422, F.543, I.545 No protein-ligand interaction detected (PLIP) DIO.8: 7 residues within 4Å: Chain A: G.131, S.216, A.217, I.220, I.303, I.309, L.311 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.216

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.9: 6 residues within 4Å: Chain A: L.88, Y.450, D.451, Q.467, N.475, A.518 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.450, A:N.475 Salt bridges: A:D.451

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 3 residues within 4Å: Chain A: N.90, L.466, Y.470 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.90 Water bridges: A:N.87 GOL.11: 6 residues within 4Å: Chain A: S.74, N.77, P.301, G.302, V.304, S.305 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.77, A:G.302 Water bridges: A:V.304, A:V.304, A:S.305, A:Y.306 GOL.12: 4 residues within 4Å: Chain A: N.527, F.528, R.529, A.530 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.529, A:A.530 GOL.13: 5 residues within 4Å: Chain A: R.51, Y.52, D.198, Y.235, K.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.236, A:K.236 GOL.14: 6 residues within 4Å: Chain A: N.475, Y.476, G.479, S.480, K.483, D.501 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.480, A:K.483, A:D.501 Water bridges: A:G.479, A:G.479, A:D.501 GOL.15: 4 residues within 4Å: Chain A: K.483, A.499, V.500, D.501 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.483, A:K.483

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.16: 5 residues within 4Å: Chain A: S.361, T.362, T.391, R.413 Ligands: SO4.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.362, A:T.362, A:R.413 SO4.17: 3 residues within 4Å: Chain A: S.361, K.364 Ligands: SO4.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.361, A:S.361 Salt bridges: A:K.364 SO4.18: 4 residues within 4Å: Chain A: Y.517, A.518, T.519, K.520 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.518, A:T.519, A:T.519, A:K.520 Water bridges: A:Y.452 Salt bridges: A:K.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gutierrez-Fernandez, J. et al., Crystal Structures of Ophiostoma Piceae Sterol Esterase: Structural Insights Into Activation Mechanism and Product Release. J.Struct.Biol. (2014)

Release Date

2014-03-19

Peptides

STEROL ESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

STEROL ESTERASE

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