SMTL ID : 4bed.2 (2 other biounits)

Keyhole limpet hemocyanin (KLH): 9A cryoEM structure and molecular model of the KLH1 didecamer reveal the interfaces and intricate topology of the 160 functional units

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 9.00 Å

Oligo State

hetero-2-2-mer

Ligands

16 x CUO: CU2-O2 CLUSTER(Non-covalent)(Covalent)

CUO.1: 8 residues within 4Å: Chain A: H.42, H.60, F.65, H.69, H.179, H.183, F.206, H.210 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:H.42, A:H.60, A:H.69, A:H.179, A:H.183, A:H.210 CUO.2: 9 residues within 4Å: Chain A: H.462, C.480, H.482, F.487, H.491, H.602, H.606, F.629, H.633 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:H.462, A:H.482, A:H.491, A:H.602, A:H.606, A:H.633 CUO.3: 9 residues within 4Å: Chain A: H.876, C.894, H.896, F.901, H.905, H.1015, H.1019, F.1042, H.1046 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:H.876, A:H.896, A:H.905, A:H.1015, A:H.1019, A:H.1046 CUO.4: 9 residues within 4Å: Chain A: H.1293, C.1309, H.1311, F.1316, H.1320, H.1424, H.1428, F.1451, H.1455 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:H.1293, A:H.1311, A:H.1320, A:H.1424, A:H.1428, A:H.1455 CUO.5: 8 residues within 4Å: Chain B: H.41, H.61, F.66, H.70, H.183, H.187, F.210, H.214 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:H.41, B:H.61, B:H.70, B:H.183, B:H.187, B:H.214 CUO.6: 9 residues within 4Å: Chain B: H.458, C.475, H.477, F.482, H.486, H.596, H.600, F.623, H.627 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:H.458, B:H.477, B:H.486, B:H.596, B:H.600, B:H.627 CUO.7: 9 residues within 4Å: Chain B: H.878, C.895, H.897, F.902, H.906, H.1006, H.1010, F.1033, H.1037 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:H.878, B:H.897, B:H.906, B:H.1006, B:H.1010, B:H.1037 CUO.8: 9 residues within 4Å: Chain B: H.1282, C.1299, H.1301, H.1310, H.1411, H.1415, L.1429, F.1438, H.1442 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:H.1282, B:H.1301, B:H.1310, B:H.1411, B:H.1415, B:H.1442 CUO.9: 8 residues within 4Å: Chain C: H.42, H.60, F.65, H.69, H.179, H.183, F.206, H.210 6 PLIP interactions: 6 interactions with chain C Metal complexes: C:H.42, C:H.60, C:H.69, C:H.179, C:H.183, C:H.210 CUO.10: 9 residues within 4Å: Chain C: H.462, C.480, H.482, F.487, H.491, H.602, H.606, F.629, H.633 6 PLIP interactions: 6 interactions with chain C Metal complexes: C:H.462, C:H.482, C:H.491, C:H.602, C:H.606, C:H.633 CUO.11: 9 residues within 4Å: Chain C: H.876, C.894, H.896, F.901, H.905, H.1015, H.1019, F.1042, H.1046 6 PLIP interactions: 6 interactions with chain C Metal complexes: C:H.876, C:H.896, C:H.905, C:H.1015, C:H.1019, C:H.1046 CUO.12: 9 residues within 4Å: Chain C: H.1293, C.1309, H.1311, F.1316, H.1320, H.1424, H.1428, F.1451, H.1455 6 PLIP interactions: 6 interactions with chain C Metal complexes: C:H.1293, C:H.1311, C:H.1320, C:H.1424, C:H.1428, C:H.1455 CUO.13: 8 residues within 4Å: Chain D: H.41, H.61, F.66, H.70, H.183, H.187, F.210, H.214 6 PLIP interactions: 6 interactions with chain D Metal complexes: D:H.41, D:H.61, D:H.70, D:H.183, D:H.187, D:H.214 CUO.14: 9 residues within 4Å: Chain D: H.458, C.475, H.477, F.482, H.486, H.596, H.600, F.623, H.627 6 PLIP interactions: 6 interactions with chain D Metal complexes: D:H.458, D:H.477, D:H.486, D:H.596, D:H.600, D:H.627 CUO.15: 10 residues within 4Å: Chain D: H.878, C.895, H.897, F.902, H.906, H.1006, H.1010, L.1024, F.1033, H.1037 6 PLIP interactions: 6 interactions with chain D Metal complexes: D:H.878, D:H.897, D:H.906, D:H.1006, D:H.1010, D:H.1037 CUO.16: 9 residues within 4Å: Chain D: H.1282, C.1299, H.1301, H.1310, H.1411, H.1415, L.1429, F.1438, H.1442 6 PLIP interactions: 6 interactions with chain D Metal complexes: D:H.1282, D:H.1301, D:H.1310, D:H.1411, D:H.1415, D:H.1442

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gatsogiannis, C. et al., Keyhole Limpet Hemocyanin: 9-A Cryoem Structure and Molecular Model of the Klh1 Didecamer Reveal the Interfaces and Intricate Topology of the 160 Functional Units. J.Mol.Biol. (2009)

Release Date

2013-12-25

Peptides

HEMOCYANIN KLH1: AC
HEMOCYANIN KLH1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

HEMOCYANIN KLH1

HEMOCYANIN KLH1

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