SMTL ID : 4bey.1

Night blindness causing G90D rhodopsin in complex with GaCT2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: T.5, F.10, N.16, G.19, V.21, R.22 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: Y.75, E.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.75, A:E.151

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: V.205, I.206, F.209, A.273, F.274, F.277 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.206

1 x PLM: PALMITIC ACID(Covalent)

PLM.4: 3 residues within 4Å: Chain A: L.322, C.323, C.324 No protein-ligand interaction detected (PLIP)

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.5: 5 residues within 4Å: Chain A: P.28, Y.30, Y.97, L.100, H.101 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.97, A:L.100, A:L.100 Hydrogen bonds: A:Y.30, A:H.101 Salt bridges: A:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singhal, A. et al., Insights Into Congenital Stationary Night Blindness Based on the Structure of G90D Rhodopsin. Embo Rep. (2013)

Release Date

2013-05-08

Peptides

Rhodopsin: A
Guanine nucleotide-binding protein G(t) subunit alpha-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Rhodopsin

Guanine nucleotide-binding protein G(t) subunit alpha-1

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