SMTL ID : 4bfe.3 (2 other biounits)

Structure of the extracellular portion of mouse CD200RLa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Y.61, N.68, W.79, T.82 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.79 Hydrogen bonds: A:N.68 NAG.2: 3 residues within 4Å: Chain A: G.74, N.76, S.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.92 Water bridges: A:N.76 NAG.9: 6 residues within 4Å: Chain A: M.26, L.96, A.143, H.165, N.167, T.169 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.96 Hydrogen bonds: A:N.167, A:T.169 NAG.10: 3 residues within 4Å: Chain A: L.189, S.191, N.196 6 PLIP interactions: 6 interactions with chain A Water bridges: A:S.151, A:S.151, A:H.192, A:H.192, A:N.196, A:N.196 NAG.11: 3 residues within 4Å: Chain A: N.19, T.101, D.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:D.118

1 x CYS: CYSTEINE(Non-covalent)

CYS.3: 6 residues within 4Å: Chain A: C.33, F.35, S.36, S.86, P.87, E.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.36, A:S.36 Water bridges: A:C.33, A:E.88

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: H.165, S.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.166, A:S.166 SO4.5: 3 residues within 4Å: Chain A: D.84, H.85, S.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.84, A:D.84, A:H.85, A:S.86

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: T.70, C.72, L.73, G.74 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.70, A:C.72, A:G.74 Water bridges: A:N.76, A:N.76, A:I.77 GOL.7: 2 residues within 4Å: Chain A: V.43, P.109 No protein-ligand interaction detected (PLIP) GOL.8: 4 residues within 4Å: Chain A: W.152, T.153, P.154, D.155 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.155, A:D.155 Water bridges: A:W.152, A:T.153, A:T.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatherley, D. et al., Structures of Cd200/Cd200 Receptor Family and Implications for Topology, Regulation, and Evolution. Structure (2013)

Release Date

2013-05-01

Peptides

CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 4

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