SMTL ID : 4bfg.1

Structure of the extracellular portion of mouse CD200R

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Y.61, N.68, W.79, A.80, H.85 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.61 Hydrogen bonds: A:W.79, A:A.80 NAG.6: 6 residues within 4Å: Chain A: L.96, M.142, A.143, H.165, N.167, T.169 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.169 Water bridges: A:N.167 NAG.7: 4 residues within 4Å: Chain A: Q.17, N.19, T.101, N.116 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.17, A:N.19 Water bridges: A:Q.17, A:Q.17, A:Q.17

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: L.39, T.40, K.41, T.108, E.110 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.39 Hydrogen bonds: A:T.40, A:T.40, A:K.41 ACT.3: 4 residues within 4Å: Chain A: Q.149, I.150, T.160, V.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.150 Water bridges: A:S.162

1 x AZI: AZIDE ION(Non-covalent)

AZI.4: 4 residues within 4Å: Chain A: E.126, T.128, E.140, M.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.126, A:T.128, A:M.142

1 x CYS: CYSTEINE(Non-covalent)

CYS.5: 2 residues within 4Å: Chain A: C.33, E.88 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatherley, D. et al., Structures of Cd200/Cd200 Receptor Family and Implications for Topology, Regulation, and Evolution. Structure (2013)

Release Date

2013-05-01

Peptides

CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1

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