SMTL ID : 4bfz.1

Crystal structure of Mycobacterium tuberculosis PanK in complex with a biaryl inhibitory compound (2b) and phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: S.104, V.105, A.106, V.107, G.108, K.109, S.110, R.244 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.106, A:V.107, A:G.108, A:K.109, A:S.110 Water bridges: A:K.109, A:T.111 Salt bridges: A:K.109, A:R.244 PO4.3: 8 residues within 4Å: Chain B: S.104, V.105, A.106, V.107, G.108, K.109, S.110, R.244 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:A.106, B:V.107, B:G.108, B:K.109, B:S.110 Water bridges: B:Q.49, B:K.109, B:K.109, B:T.111 Salt bridges: B:K.109, B:R.244

2 x ZVZ: 2-[4-(4-CYANOPHENYL)-3-{[4-(PYRIDIN-2-YL)PIPERAZIN-1-YL]METHYL}PHENOXY]-N-METHYLACETAMIDE(Non-covalent)

ZVZ.2: 17 residues within 4Å: Chain A: D.135, L.138, M.150, H.151, K.153, G.154, Y.159, Y.183, Y.188, L.209, Y.241, F.245, M.248, F.253, F.260, I.282, N.283 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.138, A:K.153, A:L.209, A:I.282 Hydrogen bonds: A:Y.188, A:Y.241 Water bridges: A:N.283 pi-Stacking: A:Y.188 ZVZ.4: 18 residues within 4Å: Chain B: D.135, L.138, M.150, H.151, K.153, G.154, Y.159, H.185, Y.188, L.209, Y.241, F.245, M.248, F.253, F.260, I.278, I.282, N.283 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.138, B:L.209, B:F.245, B:F.260, B:F.260, B:I.278, B:I.278, B:I.282 Water bridges: B:N.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjorkelid, C. et al., Structural and Biochemical Characterization of Compounds Inhibiting Mycobacterium Tuberculosis Pank. J.Biol.Chem. (2013)

Release Date

2013-05-15

Peptides

PANTOTHENATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PANTOTHENATE KINASE

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