- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OGA: N-OXALYLGLYCINE(Non-covalent)
- 2 x IVL: 1-(3-carboxypropyl)-1-methylpyrrolidin-1-ium(Non-covalent)
IVL.2: 12 residues within 4Å:- Chain A: Y.177, W.181, N.191, A.193, Y.194, D.204, Y.205, P.206, N.292, T.295, Y.366
- Ligands: OGA.1
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:W.181, A:N.191, A:A.193, A:Y.194
- Hydrogen bonds: A:N.191, A:Y.205, A:N.292
- Salt bridges: A:D.204
- pi-Cation interactions: A:Y.177, A:W.181, A:W.181
IVL.9: 12 residues within 4Å:- Chain B: Y.177, W.181, N.191, A.193, Y.194, D.204, Y.205, P.206, N.292, T.295, Y.366
- Ligands: OGA.8
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:W.181, B:N.191, B:A.193, B:Y.194
- Hydrogen bonds: B:N.191, B:Y.205, B:N.292
- Water bridges: B:T.295, B:T.295
- Salt bridges: B:D.204
- pi-Cation interactions: B:Y.177, B:W.181, B:W.181
- 8 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: H.202, D.204, H.347
- Ligands: OGA.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.202, A:D.204, A:H.347
ZN.4: 4 residues within 4Å:- Chain A: C.38, C.40, C.43, H.82
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.38, A:C.40, A:C.43, A:H.82
ZN.6: 1 residues within 4Å:- Chain A: C.267
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:C.267
ZN.7: 3 residues within 4Å:- Chain A: C.3, K.72, D.89
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.3, A:D.89, A:D.89, H2O.5
ZN.10: 4 residues within 4Å:- Chain B: H.202, D.204, H.347
- Ligands: OGA.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.202, B:D.204, B:H.347
ZN.11: 4 residues within 4Å:- Chain B: C.38, C.40, C.43, H.82
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.38, B:C.40, B:C.43, B:H.82
ZN.13: 1 residues within 4Å:- Chain B: C.267
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:C.267
ZN.14: 3 residues within 4Å:- Chain B: C.3, K.72, D.89
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.3, B:D.89, B:D.89, H2O.20
- 2 x 16D: HEXANE-1,6-DIAMINE(Non-covalent)
16D.5: 3 residues within 4Å:- Chain A: I.68, Y.75, Y.83
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.75, A:Y.83
- Hydrogen bonds: A:Y.75
16D.12: 3 residues within 4Å:- Chain B: I.68, Y.75, Y.83
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.75, B:Y.83
- Hydrogen bonds: B:Y.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tars, K. et al., Targeting Carnitine Biosynthesis: Discovery of New Inhibitors Against Gamma-Butyrobetaine Hydroxylase. J.Med.Chem. (2014)
- Release Date
- 2014-03-12
- Peptides
- GAMMA-BUTYROBETAINE DIOXYGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OGA: N-OXALYLGLYCINE(Non-covalent)
- 2 x IVL: 1-(3-carboxypropyl)-1-methylpyrrolidin-1-ium(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x 16D: HEXANE-1,6-DIAMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tars, K. et al., Targeting Carnitine Biosynthesis: Discovery of New Inhibitors Against Gamma-Butyrobetaine Hydroxylase. J.Med.Chem. (2014)
- Release Date
- 2014-03-12
- Peptides
- GAMMA-BUTYROBETAINE DIOXYGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A